|Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity|
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
|Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020|
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
|Overexpression of antibiotic resistance genes in hospital effluents over time|
WPM Rowe, C Baker-Austin, DW Verner-Jeffreys, JJ Ryan, C Micallef, ...
Journal of Antimicrobial Chemotherapy 72 (6), 1617-1623, 2017
|Search engine for antimicrobial resistance: a cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data|
W Rowe, KS Baker, D Verner-Jeffreys, C Baker-Austin, JJ Ryan, ...
PloS one 10 (7), e0133492, 2015
|Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK|
L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
|Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa|
PM Ashton, SV Owen, L Kaindama, WPM Rowe, CR Lane, L Larkin, ...
Genome medicine 9 (1), 1-13, 2017
|Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant|
HH Al-Balool, D Weber, Y Liu, M Wade, K Guleria, PLP Nam, J Clayton, ...
Genome research 21 (11), 1788-1799, 2011
|Comparative metagenomics reveals a diverse range of antimicrobial resistance genes in effluents entering a river catchment|
W Rowe, DW Verner-Jeffreys, C Baker-Austin, JJ Ryan, DJ Maskell, ...
Water Science and Technology 73 (7), 1541-1549, 2016
|An integrated national scale SARS-CoV-2 genomic surveillance network|
The Lancet Microbe, 2020
|Host subtraction, filtering and assembly validations for novel viral discovery using next generation sequencing data|
GM Daly, RM Leggett, W Rowe, S Stubbs, M Wilkinson, ...
PLoS One 10 (6), e0129059, 2015
|Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580|
R Canals, DL Hammarlöf, C Kröger, SV Owen, WY Fong, ...
PLoS biology 17 (1), e3000059, 2019
|Indexed variation graphs for efficient and accurate resistome profiling|
WPM Rowe, MD Winn
Bioinformatics 34 (21), 3601-3608, 2018
|Increased risk of SARS-CoV-2 infection in staff working across different care homes: enhanced CoVID-19 outbreak investigations in London care Homes|
SN Ladhani, JY Chow, R Janarthanan, J Fok, E Crawley-Boevey, ...
Journal of Infection 81 (4), 621-624, 2020
|Streaming histogram sketching for rapid microbiome analytics|
WPM Rowe, AP Carrieri, C Alcon-Giner, S Caim, A Shaw, K Sim, JS Kroll, ...
Microbiome 7 (1), 1-13, 2019
|Detection of the florfenicol resistance gene floR in Chryseobacterium isolates from rainbow trout. Exception to the general rule?|
DW Verner-Jeffreys, T Brazier, RY Perez, D Ryder, RM Card, TJ Welch, ...
FEMS microbiology ecology 93 (4), fix015, 2017
|When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data|
Genome biology 20 (1), 1-12, 2019
|The diversity, evolution and ecology of Salmonella in venomous snakes|
CV Pulford, N Wenner, ML Redway, EV Rodwell, HJ Webster, R Escudero, ...
PLoS neglected tropical diseases 13 (6), e0007169, 2019
|Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study|
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health, 2021
|An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes|
BM Perez-Sepulveda, D Heavens, CV Pulford, AV Predeus, R Low, ...
|A fast machine learning workflow for rapid phenotype prediction from whole shotgun metagenomes|
AP Carrieri, WPM Rowe, M Winn, EO Pyzer-Knapp
Proceedings of the AAAI Conference on Artificial Intelligence 33 (01), 9434-9439, 2019