|Search engine for antimicrobial resistance: a cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data|
W Rowe, KS Baker, D Verner-Jeffreys, C Baker-Austin, JJ Ryan, ...
PLoS One 10 (7), 2015
|Overexpression of antibiotic resistance genes in hospital effluents over time|
WPM Rowe, C Baker-Austin, DW Verner-Jeffreys, JJ Ryan, C Micallef, ...
Journal of Antimicrobial Chemotherapy 72 (6), 1617-1623, 2017
|Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant|
HH Al-Balool, D Weber, Y Liu, M Wade, K Guleria, PLP Nam, J Clayton, ...
Genome research 21 (11), 1788-1799, 2011
|Comparative metagenomics reveals a diverse range of antimicrobial resistance genes in effluents entering a river catchment|
W Rowe, DW Verner-Jeffreys, C Baker-Austin, JJ Ryan, DJ Maskell, ...
Water Science and Technology 73 (7), 1541-1549, 2016
|Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa|
PM Ashton, SV Owen, L Kaindama, WPM Rowe, CR Lane, L Larkin, ...
Genome medicine 9 (1), 92, 2017
|Host subtraction, filtering and assembly validations for novel viral discovery using next generation sequencing data|
GM Daly, RM Leggett, W Rowe, S Stubbs, M Wilkinson, ...
PLoS One 10 (6), 2015
|Indexed variation graphs for efficient and accurate resistome profiling|
WPM Rowe, MD Winn
Bioinformatics 34 (21), 3601-3608, 2018
|Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580|
R Canals, DL Hammarlöf, C Kröger, SV Owen, WY Fong, ...
PLoS biology 17 (1), 2019
|Streaming histogram sketching for rapid microbiome analytics|
WPM Rowe, AP Carrieri, C Alcon-Giner, S Caim, A Shaw, K Sim, JS Kroll, ...
Microbiome 7 (1), 40, 2019
|When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data|
Genome biology 20 (1), 199, 2019
|Detection of the florfenicol resistance gene floR in Chryseobacterium isolates from rainbow trout. Exception to the general rule?|
DW Verner-Jeffreys, T Brazier, RY Perez, D Ryder, RM Card, TJ Welch, ...
FEMS microbiology ecology 93 (4), fix015, 2017
|Salmonella enterica serovar Typhimurium ST313 responsible for gastroenteritis in the UK are genetically distinct from isolates causing bloodstream infections in Africa|
PM Ashton, SV Owen, L Kaindama, WPM Rowe, C Lane, L Larkin, S Nair, ...
BioRxiv, 139576, 2017
|A fast machine learning workflow for rapid phenotype prediction from whole shotgun metagenomes|
AP Carrieri, WPM Rowe, M Winn, EO Pyzer-Knapp
Proceedings of the AAAI Conference on Artificial Intelligence 33, 9434-9439, 2019
|The diversity, evolution and ecology of Salmonella in venomous snakes|
CV Pulford, N Wenner, ML Redway, EV Rodwell, HJ Webster, R Escudero, ...
PLoS neglected tropical diseases 13 (6), 2019
|Antimicrobial resistance gene monitoring in aquatic environments (thesis)|
University of Cambridge, 2016