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Juan A. Ugalde
Juan A. Ugalde
Center for Bioinformatics and Integrative Biology, Universidad Andres Bello
Verified email at unab.cl
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Cited by
Cited by
Year
GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity
DA Shagin, EV Barsova, YG Yanushevich, AF Fradkov, KA Lukyanov, ...
Molecular biology and evolution 21 (5), 841-850, 2004
5382004
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ...
The ISME Journal, 2011
3802011
Identification of thiotetronic acid antibiotic biosynthetic pathways by target-directed genome mining
X Tang, J Li, N Millán-Aguiñaga, JJ Zhang, EC O’Neill, JA Ugalde, ...
ACS Chemical Biology 10 (12), 2841-2849, 2015
2442015
The gut microbiota of healthy Chilean subjects reveals a high abundance of the phylum Verrucomicrobia
S Fujio-Vejar, Y Vasquez, P Morales, F Magne, P Vera-Wolf, JA Ugalde, ...
Frontiers in microbiology 8, 253607, 2017
2342017
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
2002021
A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596
D Garrido, S Ruiz-Moyano, N Kirmiz, JC Davis, SM Totten, DG Lemay, ...
Scientific reports 6 (1), 35045, 2016
1682016
Evolution of coral pigments recreated
JA Ugalde, BSW Chang, MV Matz
Science 305 (5689), 1433, 2004
1572004
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations
G Levicán, JA Ugalde, N Ehrenfeld, A Maass, P Parada
BMC genomics 9, 1-19, 2008
1292008
Assembly-driven community genomics of a hypersaline microbial ecosystem
S Podell, JA Ugalde, P Narasingarao, JF Banfield, KB Heidelberg, ...
PloS one 8 (4), e61692, 2013
1012013
Evolution of the indoor biome
LJ Martin, RI Adams, A Bateman, HM Bik, J Hawks, SM Hird, D Hughes, ...
Trends in Ecology & Evolution 30 (4), 223-232, 2015
982015
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community
S Podell, JB Emerson, CM Jones, JA Ugalde, S Welch, KB Heidelberg, ...
The ISME journal 8 (5), 979-990, 2014
942014
Impact of dietary lipids on colonic function and microbiota: an experimental approach involving orlistat-induced fat malabsorption in human volunteers
P Morales, S Fujio, P Navarrete, JA Ugalde, F Magne, C Carrasco-Pozo, ...
Clinical and translational gastroenterology 7 (4), e161, 2016
852016
Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria
JA Ugalde, S Podell, P Narasingarao, EE Allen
Biology direct 6, 1-8, 2011
642011
Bacterially produced metabolites protect C. elegans neurons from degeneration
A Urrutia, VA García-Angulo, A Fuentes, M Caneo, M Legüe, S Urquiza, ...
PLoS biology 18 (3), e3000638, 2020
552020
Microbial biotransformations in the human distal gut
EM Bik, JA Ugalde, J Cousins, AD Goddard, J Richman, ZS Apte
British Journal of Pharmacology 175 (24), 4404-4414, 2018
542018
Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis
A Undabarrena, JA Ugalde, M Seeger, B Cámara
PeerJ 5, e2912, 2017
482017
Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins
BSW Chang, JA Ugalde, MV Matz
Methods in enzymology 395, 652-670, 2005
422005
Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current
JJ Kharbush, JA Ugalde, SL Hogle, EE Allen, LI Aluwihare
Applied and Environmental Microbiology 79 (23), 7491-7501, 2013
392013
Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate
F Asenjo, A Olmos, P Henríquez-Piskulich, V Polanco, P Aldea, ...
PeerJ 4, e1950, 2016
342016
Distinctive gene and protein characteristics of extremely piezophilic Colwellia
LM Peoples, TS Kyaw, JA Ugalde, KK Mullane, RA Chastain, AA Yayanos, ...
BMC genomics 21, 1-18, 2020
332020
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Articles 1–20