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Johannes Schindelin
Johannes Schindelin
Unknown affiliation
Verified email at wisc.edu
Title
Cited by
Cited by
Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature methods 9 (7), 676-682, 2012
523812012
ImageJ2: ImageJ for the next generation of scientific image data
CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ...
BMC bioinformatics 18, 1-26, 2017
54172017
TrackMate: An open and extensible platform for single-particle tracking
JY Tinevez, N Perry, J Schindelin, GM Hoopes, GD Reynolds, ...
Methods 115, 80-90, 2017
27882017
The ImageJ ecosystem: An open platform for biomedical image analysis
J Schindelin, CT Rueden, MC Hiner, KW Eliceiri
Molecular reproduction and development 82 (7-8), 518-529, 2015
26072015
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ...
Bioinformatics 33 (15), 2424-2426, 2017
18372017
A new metric for probability distributions
DM Endres, JE Schindelin
IEEE Transactions on Information theory 49 (7), 1858-1860, 2003
13152003
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
9302012
A high-level 3D visualization API for Java and ImageJ
B Schmid, J Schindelin, A Cardona, M Longair, M Heisenberg
BMC bioinformatics 11 (1), 1-7, 2010
5732010
Software for bead-based registration of selective plane illumination microscopy data
S Preibisch, S Saalfeld, J Schindelin, P Tomancak
Nature methods 7 (6), 418-419, 2010
4352010
Crowdsourcing the creation of image segmentation algorithms for connectomics
I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ...
Frontiers in neuroanatomy 9, 142, 2015
3512015
OpenSPIM: an open-access light-sheet microscopy platform
PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ...
Nature methods 10 (7), 598-599, 2013
3472013
A Doppler effect in embryonic pattern formation
D Soroldoni, DJ Jörg, LG Morelli, DL Richmond, J Schindelin, F Jülicher, ...
Science 345 (6193), 222-225, 2014
1292014
MIJ: making interoperability between ImageJ and Matlab possible
D Sage, D Prodanov, JY Tinevez, J Schindelin
ImageJ User & Developer Conference 2426, 2012
782012
714 Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. 715 Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nat Methods 9, 676-682, 0
69
The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
A Jenett, JE Schindelin, M Heisenberg
BMC bioinformatics 7 (1), 1-12, 2006
682006
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
A Cardona, S Saalfeld, I Arganda, W Pereanu, J Schindelin, V Hartenstein
Journal of Neuroscience 30 (22), 7538-7553, 2010
672010
C., Saalfeld, S., Schmid, B., Tinevez, J
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Y., White, DJ, Hartenstein, V., Eliceiri, K., Tomancak, P. & Cardona, A, 676-682, 2012
662012
Fiji is just ImageJ-Batteries included
J Schindelin
Proceedings of the ImageJ User and Developer Conference, Luxembourg, 2008
662008
Cooperativity among Rev-associated nuclear export signals regulates HIV-1 gene expression and is a determinant of virus species tropism
M Aligeti, RT Behrens, GM Pocock, J Schindelin, C Dietz, KW Eliceiri, ...
Journal of Virology 88 (24), 14207-14221, 2014
302014
Bayesian binning beats approximate alternatives: estimating peri-stimulus time histograms
D Endres, M Oram, J Schindelin, P Foldiak
Advances in neural information processing systems 20, 2007
272007
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