BioModels
BioModels
European Bioinformatics Institute (EMBL - EBI)
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TitleCited byYear
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419, 2013
8212013
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
N Le Novère, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ...
Nucleic acids research 34 (suppl 1), D689-D691, 2006
8032006
The systems biology graphical notation
N Le Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
7652009
Minimum information requested in the annotation of biochemical models (MIRIAM)
N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ...
Nature biotechnology 23 (12), 1509-1515, 2005
5802005
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155, 2008
5612008
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935, 2010
5512010
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
BMC systems biology 4 (1), 92, 2010
5192010
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889, 2008
4832008
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 2011
2172011
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
1972014
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2014
1912014
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 198, 2011
1772011
Identifiers. org and MIRIAM Registry: community resources to provide persistent identification
N Juty, N Le Novere, C Laibe
Nucleic acids research 40 (D1), D580-D586, 2011
1592011
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
1132011
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7 (1), 116, 2013
1062013
MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology
C Laibe, N Le Novère
BMC Systems Biology 1 (1), 58, 2007
1062007
The impact of mathematical modeling on the understanding of diabetes and related complications
I Ajmera, M Swat, C Laibe, N Le Novère, V Chelliah
CPT: pharmacometrics & systems pharmacology 2 (7), 1-14, 2013
1022013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
1002013
Model storage, exchange and integration
N Le Novère
BMC neuroscience 7 (1), S11, 2006
992006
BioModels database: a repository of mathematical models of biological processes
V Chelliah, C Laibe, N Le Novère
Encyclopedia of Systems Biology, 134-138, 2013
962013
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Articles 1–20