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Mahmoud M Ibrahim
Mahmoud M Ibrahim
Bayer AG
Verified email at bayer.com - Homepage
Title
Cited by
Cited by
Year
Benchmark and integration of resources for the estimation of human transcription factor activities
L Garcia-Alonso, CH Holland, MM Ibrahim, D Turei, J Saez-Rodriguez
Genome research 29 (8), 1363-1375, 2019
6032019
Decoding myofibroblast origins in human kidney fibrosis
C Kuppe, MM Ibrahim, J Kranz, X Zhang, S Ziegler, J Perales-Patón, ...
Nature 589 (7841), 281-286, 2021
4172021
Human Promoters Are Intrinsically Directional
SHC Duttke, SA Lacadie, MM Ibrahim, CK Glass, DL Corcoran, C Benner, ...
Molecular cell 57 (4), 674-684, 2015
1532015
A multi-step transcriptional and chromatin state cascade underlies motor neuron programming from embryonic stem cells
S Velasco, MM Ibrahim, A Kakumanu, G Garipler, B Aydin, MA Al-Sayegh, ...
Cell Stem Cell 20 (2), 205-217. e8, 2017
992017
JAMM: a peak finder for joint analysis of NGS replicates
MM Ibrahim, SA Lacadie, U Ohler
Bioinformatics 31 (1), 48-55, 2015
812015
Expression of recombinant staphylokinase in the methylotrophic yeast Hansenula polymorpha
M Moussa, M Ibrahim, M El Ghazaly, J Rohde, S Gnoth, A Anton, F Kensy, ...
BMC biotechnology 12, 1-13, 2012
422012
Determinants of promoter and enhancer transcription directionality in metazoans
MM Ibrahim, A Karabacak, A Glahs, E Kolundzic, A Hirsekorn, A Carda, ...
Nature communications 9 (1), 4472, 2018
322018
Divergent transcription and epigenetic directionality of human promoters
SA Lacadie, MM Ibrahim, SA Gokhale, U Ohler
The FEBS journal 283 (23), 4214-4222, 2016
292016
Perspectives on unidirectional versus divergent transcription
SHC Duttke, SA Lacadie, MM Ibrahim, CK Glass, DL Corcoran, C Benner, ...
Molecular cell 60 (3), 348-349, 2015
212015
genesorteR: Feature Ranking in Clustered Single Cell Data
MM Ibrahim, R Kramann
bioRxiv, 676379, 2019
192019
Fibrosis and immune cell infiltration are separate events regulated by cell-specific receptor notch3 expression
S Brandt, TM Ballhause, A Bernhardt, A Becker, D Salaru, HM Le-Deffge, ...
Journal of the American Society of Nephrology 31 (11), 2589-2608, 2020
162020
A functional landscape of CKD entities from public transcriptomic data
F Tajti, C Kuppe, A Antoranz, MM Ibrahim, H Kim, F Ceccarelli, ...
Kidney international reports 5 (2), 211-224, 2020
162020
Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database
J Camps, F Noël, R Liechti, L Massenet-Regad, S Rigade, L Götz, ...
Cancer Research 83 (3), 363-373, 2023
142023
Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment
B Kang, J Camps, B Fan, H Jiang, MM Ibrahim, X Hu, S Qin, D Kirchhoff, ...
Genome biology 23 (1), 265, 2022
142022
Cellenium—a scalable and interactive visual analytics app for exploring multimodal single-cell data
C Jahn, M Ibrahim, J Busch, Q Lin, H Manchanda, H Mohr, D Plischke, ...
Bioinformatics 39 (6), btad349, 2023
2023
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