Javier F. Tabima
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Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
ZN Kamvar, JF Tabima, NJ Grünwald
PeerJ 2, e281, 2014
The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes
EM Goss, JF Tabima, DEL Cooke, S Restrepo, WE Fry, GA Forbes, ...
Proceedings of the National Academy of Sciences 111 (24), 8791-8796, 2014
Five new species of entomopathogenic fungi from the Amazon and evolution of neotropical Ophiocordyceps
TI Sanjuan, AE Franco-Molano, RM Kepler, JW Spatafora, J Tabima, ...
Fungal Biology 119 (10), 901-916, 2015
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ. 2014; 2: e281
ZN Kamvar, JF Tabima, NJ Grünwald
Phylogeography and molecular epidemiology of Papaya ringspot virus
XAO Castillo, G Fermin, J Tabima, Y Rojas, PF Tennant, M Fuchs, ...
Virus research 159 (2), 132-140, 2011
Loop‐mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans
ZR Hansen, BJ Knaus, JF Tabima, CM Press, HS Judelson, NJ Grünwald, ...
Journal of Applied Microbiology 120 (4), 1010-1020, 2016
Entomopathogens of Amazonian stick insects and locusts are members of the Beauveria species complex (Cordyceps sensu stricto)
T Sanjuan, J Tabima, S Restrepo, T Læssøe, JW Spatafora, ...
Mycologia 106 (2), 260-275, 2014
Unexpected conservation and global transmission of agrobacterial virulence plasmids
AJ Weisberg, EW Davis, J Tabima, MS Belcher, M Miller, CH Kuo, ...
Science 368 (6495), eaba5256, 2020
Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151
ML Arrieta-Ortiz, LM Rodríguez-R, AL Perez-Quintero, L Poulin, AC Díaz, ...
PloS one 8 (11), e79704, 2013
Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales
MA Cristancho, DO Botero-Rozo, W Giraldo, J Tabima, DM Riaño-Pachón, ...
Frontiers in plant science 5, 594, 2014
Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum
AL Dale, N Feau, SE Everhart, B Dhillon, B Wong, J Sheppard, ...
MBio 10 (2), 10.1128/mbio. 02452-18, 2019
Speciation in fungal and oomycete plant pathogens
S Restrepo, JF Tabima, MF Mideros, NJ Grünwald, DR Matute
Annual review of phytopathology 52, 289-316, 2014
Seborrheic dermatitis: predisposing factors and ITS2 secondary structure for Malassezia phylogenic analysis
Y Amado, A Patiño-Uzcátegui, MC Cepero de García, J Tabima, A Motta, ...
Medical mycology 51 (8), 868-875, 2013
Virulence gene expression in Malassezia spp from individuals with seborrheic dermatitis
A Patiño-Uzcátegui, Y Amado, M Cepero de García, D Chaves, J Tabima, ...
Elsevier, 2011
Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, in New Zealand and the west coast of the United States of America
S Brar, JF Tabima, RL McDougal, PY Dupont, N Feau, RC Hamelin, ...
Plant pathology 67 (5), 1131-1139, 2018
Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia
MF Mideros, DA Turissini, N Guayazán, H Ibarra-Avila, G Danies, ...
Persoonia-Molecular Phylogeny and Evolution of Fungi 41 (1), 39-55, 2018
Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria
EW Davis II, AJ Weisberg, JF Tabima, NJ Grunwald, JH Chang
PeerJ 4, e2222, 2016
Genome-wide increased copy number is associated with emergence of dominant clones of the Irish potato famine pathogen Phytophthora infestans
BJ Knaus, JF Tabima, SK Shakya, HS Judelson, NJ Grünwald
MBio 11 (3), 10.1128/mbio. 00326-20, 2020
effectR: An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches
JF Tabima, NJ Grünwald
Molecular Plant-Microbe Interactions 32 (9), 1067-1076, 2019
Phylogenomic analyses of non-dikarya fungi supports horizontal gene transfer driving diversification of secondary metabolism in the amphibian gastrointestinal symbiont …
JF Tabima, IA Trautman, Y Chang, Y Wang, S Mondo, A Kuo, A Salamov, ...
G3: Genes, Genomes, Genetics 10 (9), 3417-3433, 2020
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