| The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of Cheminformatics, S2, 2015 | 361 | 2015 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-aryamontri, ... BMC bioinformatics 12 (Suppl 8), S3, 2011 | 194 | 2011 |
| Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 S Pyysalo, T Ohta, R Rak, A Rowley, HW Chun, SJ Jung, SP Choi, J Tsujii, ... BMC Bioinformatics 16 (Suppl 10), S2, 2015 | 152 | 2015 |
| Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao, C Wang, B Sobral, J Tsujii, ... BMC bioinformatics 13 (Suppl 11), S2, 2012 | 148 | 2012 |
| Argo: an integrative, interactive, text mining-based workbench supporting curation. R Rak, A Rowley, W Black, S Ananiadou Database: The Journal of Biological Databases & Curation 2012, 2012 | 107 | 2012 |
| A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text M Miwa, T Ohta, R Rak, A Rowley, DB Kell, S Pyysalo, S Ananiadou Bioinformatics 29 (13), i44-i52, 2013 | 49 | 2013 |
| Facilitating the analysis of discourse phenomena in an interoperable NLP platform RT Batista-Navarro, G Kontonatsios, C Mihăilă, P Thompson, R Rak, ... Computational Linguistics and Intelligent Text Processing, 559-571, 2013 | 46 | 2013 |
| Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature X Wang, R Rak, A Restificar, C Nobata, CJ Rupp, RTB Batista-Navarro, ... BMC bioinformatics 12 (Suppl 8), S11, 2011 | 45 | 2011 |
| Multi-label associative classification of medical documents from medline R Rak, L Kurgan, M Reformat Machine Learning and Applications, 2005. Proceedings. Fourth International …, 2005 | 43 | 2005 |
| Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics R Batista-Navarro, R Rak, S Ananiadou Journal of Cheminformatics, S6, 2015 | 42 | 2015 |
| A tree-projection-based algorithm for multi-label recurrent-item associative-classification rule generation R Rak, L Kurgan, M Reformat Data & Knowledge Engineering 64 (1), 171-197, 2008 | 38 | 2008 |
| Multilabel associative classification categorization of MEDLINE aticles into MeSH keywords R Rak, LA Kurgan, M Reformat Engineering in Medicine and Biology Magazine, IEEE 26 (2), 47-55, 2007 | 38 | 2007 |
| Considering re-occurring features in associative classifiers R Rak, W Stach, OR Zaļane, ML Antonie Advances in Knowledge Discovery and Data Mining, 240-248, 2005 | 37 | 2005 |
| Text-mining-assisted biocuration workflows in Argo R Rak, RT Batista-Navarro, A Rowley, J Carter, S Ananiadou Database 2014, bau070, 2014 | 26 | 2014 |
| Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows X Fu, R Batista-Navarro, R Rak, S Ananiadou Journal of biomedical semantics 6 (1), 8, 2015 | 24 | 2015 |
| BioC interoperability track overview DC Comeau, RT Batista-Navarro, HJ Dai, RI Doğan, AJ Yepes, R Khare, ... Database 2014, bau053, 2014 | 22 | 2014 |
| Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-aryamontri, ... BMC Bioinformatics 12 (Suppl 8), 2011 | 17 | 2011 |
| Processing biological literature with customizable Web services supporting interoperable formats R Rak, RT Batista-Navarro, J Carter, A Rowley, S Ananiadou Database 2014, bau064, 2014 | 16 | 2014 |
| Chemistry-specific features and heuristics for developing a CRF-based chemical named entity recogniser RT Batista-Navarro, R Rak, S Ananiadou BioCreative Challenge Evaluation Workshop vol 2, 55, 2013 | 16 | 2013 |
| Making UIMA Truly Interoperable with SPARQL R Rak, S Ananiadou LAW VII & ID, 89, 2013 | 12 | 2013 |
