| Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins KP Tan, TB Nguyen, S Patel, R Varadarajan, MS Madhusudhan Nucleic acids research 41 (W1), W314-W321, 2013 | 198 | 2013 |
| ThermoMutDB: a thermodynamic database for missense mutations JS Xavier, TB Nguyen, M Karmarkar, S Portelli, PM Rezende, JPL Velloso, ... Nucleic acids research 49 (D1), D475-D479, 2021 | 60 | 2021 |
| Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures Q Pan, TB Nguyen, DB Ascher, DEV Pires Briefings in Bioinformatics 23 (2), bbac025, 2022 | 23 | 2022 |
| Unraveling the structural basis for the unusually rich association of human leukocyte antigen DQ2. 5 with class-II-associated invariant chain peptides TB Nguyen, P Jayaraman, E Bergseng, MS Madhusudhan, CY Kim, ... Journal of Biological Chemistry 292 (22), 9218-9228, 2017 | 21 | 2017 |
| SAP domain forms a flexible part of DNA aperture in Ku70/80 A Hnízda, P Tesina, TB Nguyen, Z Kukačka, L Kater, AK Chaplin, ... The FEBS Journal 288 (14), 4382-4393, 2021 | 19 | 2021 |
| Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome SEM Stephenson, G Costain, LER Blok, MA Silk, TB Nguyen, X Dong, ... The American Journal of Human Genetics 109 (4), 601-617, 2022 | 15 | 2022 |
| Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase Y Zhou, S Portelli, M Pat, CHM Rodrigues, TB Nguyen, DEV Pires, ... Computational and Structural Biotechnology Journal 19, 5381-5391, 2021 | 12 | 2021 |
| Definition of the immune evasion-replication interface of rabies virus P protein J Zhan, AR Harrison, S Portelli, TB Nguyen, I Kojima, S Zheng, F Yan, ... PLoS Pathogens 17 (7), e1009729, 2021 | 9 | 2021 |
| mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity TB Nguyen, Y Myung, AGC de Sá, DEV Pires, DB Ascher NAR genomics and bioinformatics 3 (4), lqab109, 2021 | 7 | 2021 |
| Computational design of macrocyclic binders of S100B (ββ): novel peptide theranostics S Kannan, PGA Aronica, TB Nguyen, J Li, CS Verma Molecules 26 (3), 721, 2021 | 5 | 2021 |
| A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility JC Boer, Q Pan, JK Holien, TB Nguyen, DB Ascher, M Plebanski Frontiers in Immunology 13, 954435, 2022 | 4 | 2022 |
| kinCSM: Using graph‐based signatures to predict small molecule CDK2 inhibitors Y Zhou, R Al‐Jarf, A Alavi, TB Nguyen, CHM Rodrigues, DEV Pires, ... Protein Science 31 (11), e4453, 2022 | 4 | 2022 |
| CSM-carbohydrate: protein-carbohydrate binding affinity prediction and docking scoring function TB Nguyen, DEV Pires, DB Ascher Briefings in Bioinformatics 23 (1), bbab512, 2022 | 4 | 2022 |
| LEGO-CSM: a tool for functional characterization of proteins TB Nguyen, AGC de Sá, CHM Rodrigues, DEV Pires, DB Ascher Bioinformatics 39 (7), btad402, 2023 | 1 | 2023 |
| Can glycosylation mask the detection of MHC expressing p53 peptides by T cell receptors? TB Nguyen, DP Lane, CS Verma Biomolecules 11 (7), 1056, 2021 | 1 | 2021 |
| kinCSM: using graph-based signatures to predict small molecule CDK2 kinase inhibitors Y Zhou, R Al-Jarf, A Alavi, TB Nguyen, CHM Rodrigues, DEV Pires, ... | 1 | 2021 |
| DEMM: A meta-algorithm to predict the pka of ionizable amino acids in proteins TB Nguyen, KP Tan, MS Madhusudhan 5th International Conference on Biomedical Engineering in Vietnam, 343-346, 2015 | 1 | 2015 |
| Characterization on the oncogenic effect of the missense mutations of p53 via machine learning Q Pan, S Portelli, TB Nguyen, DB Ascher Briefings in Bioinformatics 25 (1), bbad428, 2024 | | 2024 |
| Targeting the Plasmodium falciparum UCHL3 ubiquitin hydrolase using chemically constrained peptides HR King, M Bycroft, TB Nguyen, G Kelly, AA Vinogradov, PJE Rowling, ... bioRxiv, 2024.01. 11.575158, 2024 | | 2024 |
| Computational studies on the structural aspects of protein-peptide interactions TB Nguyen PQDT-Global, 2017 | | 2017 |
David AscherUniversity of Queensland; Baker InstituteVerified email at uq.edu.au
