Nguyen Thanhbinh
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Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins
KP Tan, TB Nguyen, S Patel, R Varadarajan, MS Madhusudhan
Nucleic acids research 41 (W1), W314-W321, 2013
ThermoMutDB: a thermodynamic database for missense mutations
JS Xavier, TB Nguyen, M Karmarkar, S Portelli, PM Rezende, JPL Velloso, ...
Nucleic acids research 49 (D1), D475-D479, 2021
Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures
Q Pan, TB Nguyen, DB Ascher, DEV Pires
Briefings in Bioinformatics 23 (2), bbac025, 2022
Unraveling the structural basis for the unusually rich association of human leukocyte antigen DQ2. 5 with class-II-associated invariant chain peptides
TB Nguyen, P Jayaraman, E Bergseng, MS Madhusudhan, CY Kim, ...
Journal of Biological Chemistry 292 (22), 9218-9228, 2017
SAP domain forms a flexible part of DNA aperture in Ku70/80
A Hnízda, P Tesina, TB Nguyen, Z Kukačka, L Kater, AK Chaplin, ...
The FEBS Journal 288 (14), 4382-4393, 2021
Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome
SEM Stephenson, G Costain, LER Blok, MA Silk, TB Nguyen, X Dong, ...
The American Journal of Human Genetics 109 (4), 601-617, 2022
Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase
Y Zhou, S Portelli, M Pat, CHM Rodrigues, TB Nguyen, DEV Pires, ...
Computational and Structural Biotechnology Journal 19, 5381-5391, 2021
mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity
TB Nguyen, Y Myung, AGC de Sá, DEV Pires, DB Ascher
NAR genomics and bioinformatics 3 (4), lqab109, 2021
Definition of the immune evasion-replication interface of rabies virus P protein
J Zhan, AR Harrison, S Portelli, TB Nguyen, I Kojima, S Zheng, F Yan, ...
PLoS Pathogens 17 (7), e1009729, 2021
A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility
JC Boer, Q Pan, JK Holien, TB Nguyen, DB Ascher, M Plebanski
Frontiers in Immunology 13, 954435, 2022
Computational design of macrocyclic binders of S100B (ββ): novel peptide theranostics
S Kannan, PGA Aronica, TB Nguyen, J Li, CS Verma
Molecules 26 (3), 721, 2021
kinCSM: Using graph‐based signatures to predict small molecule CDK2 inhibitors
Y Zhou, R Al‐Jarf, A Alavi, TB Nguyen, CHM Rodrigues, DEV Pires, ...
Protein Science 31 (11), e4453, 2022
CSM-carbohydrate: protein-carbohydrate binding affinity prediction and docking scoring function
TB Nguyen, DEV Pires, DB Ascher
Briefings in Bioinformatics 23 (1), bbab512, 2022
LEGO-CSM: a tool for functional characterization of proteins
TB Nguyen, AGC de Sá, CHM Rodrigues, DEV Pires, DB Ascher
Bioinformatics 39 (7), btad402, 2023
Can glycosylation mask the detection of MHC expressing p53 peptides by T cell receptors?
TB Nguyen, DP Lane, CS Verma
Biomolecules 11 (7), 1056, 2021
kinCSM: using graph-based signatures to predict small molecule CDK2 kinase inhibitors
Y Zhou, R Al-Jarf, A Alavi, TB Nguyen, CHM Rodrigues, DEV Pires, ...
DEMM: A meta-algorithm to predict the pka of ionizable amino acids in proteins
TB Nguyen, KP Tan, MS Madhusudhan
5th International Conference on Biomedical Engineering in Vietnam, 343-346, 2015
Targeting the Plasmodium falciparum UCHL3 ubiquitin hydrolase using chemically constrained peptides
HR King, M Bycroft, TB Nguyen, G Kelly, AA Vinogradov, PJE Rowling, ...
Proceedings of the National Academy of Sciences 121 (21), e2322923121, 2024
Mechanisms of biased agonism by Gαi/o-biased stapled peptide agonists of the relaxin-3 receptor
T Jayakody, A Inoue, S Kannan, G Nakamura, K Kawakami, K Mendis, ...
Science Signaling 17 (823), eabl5880, 2024
Characterization on the oncogenic effect of the missense mutations of p53 via machine learning
Q Pan, S Portelli, TB Nguyen, DB Ascher
Briefings in Bioinformatics 25 (1), bbad428, 2024
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