Mateusz Kurcinski
Mateusz Kurcinski
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Cited by
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik
Nucleic acids research 43 (W1), W419-W424, 2015
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ...
Nucleic acids research 46 (W1), W338-W343, 2018
Protein–peptide docking: opportunities and challenges
M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ...
Drug discovery today 23 (8), 1530-1537, 2018
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ...
Methods 93, 72-83, 2016
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility
A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura
Nucleic acids research 47 (W1), W300-W307, 2019
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility
M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik
Bioinformatics 35 (4), 694-695, 2019
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step
K Steczkiewicz, MT Zimmermann, M Kurcinski, BA Lewis, D Dobbs, ...
Proceedings of the National Academy of Sciences 108 (23), 9443-9448, 2011
Flexible docking of peptides to proteins using CABS‐dock
M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik
Protein Science 29 (1), 211-222, 2020
CABS-dock standalone: a toolbox for flexible protein–peptide docking
M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ...
Bioinformatics 35 (20), 4170-4172, 2019
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction
MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ...
Scientific reports 6 (1), 37532, 2016
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations
M Kurcinski, A Kolinski, S Kmiecik
Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014
Highly flexible protein-peptide docking using cabs-dock
MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik
Modeling Peptide-Protein Interactions: Methods and Protocols, 69-94, 2017
Protein–peptide docking using CABS-dock and contact information
M Blaszczyk, MP Ciemny, A Kolinski, M Kurcinski, S Kmiecik
Briefings in bioinformatics 20 (6), 2299-2305, 2019
Denatured proteins and early folding intermediates simulated in a reduced conformational space
S Kmiecik, M Kurcinski, A Rutkowska, D Gront, A Kolinski
Acta Biochimica Polonica 53 (1), 131-144, 2005
Hierarchical modeling of protein interactions
M Kurcinski, A Kolinski
Journal of Molecular Modeling 13, 691-698, 2007
Steps towards flexible docking: modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators’ sequences
M Kurcinski, A Kolinski
The Journal of steroid biochemistry and molecular biology 103 (3-5), 357-360, 2007
Aggrescan3D standalone package for structure-based prediction of protein aggregation properties
A Kuriata, V Iglesias, M Kurcinski, S Ventura, S Kmiecik
Bioinformatics 35 (19), 3834-3835, 2019
Analysis and optimization of interactions between peptides mimicking the GD2 ganglioside and the monoclonal antibody 14G2a
I HORWAcIK, M Kurciński, M Bzowska, AK KOWALcZYK, D Czaplicki, ...
International journal of molecular medicine 28 (1), 47-57, 2011
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes
AE Badaczewska-Dawid, C Nithin, K Wroblewski, M Kurcinski, S Kmiecik
Nucleic Acids Research 50 (W1), W474-W482, 2022
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif
MP Ciemny, M Kurcinski, M Blaszczyk, A Kolinski, S Kmiecik
BioMedical Engineering OnLine 16, 1-9, 2017
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