Follow
Maciej Paweł Ciemny
Title
Cited by
Cited by
Year
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ...
Nucleic acids research 46 (W1), W338-W343, 2018
3232018
Protein–peptide docking: opportunities and challenges
M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ...
Drug discovery today 23 (8), 1530-1537, 2018
2692018
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility
M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik
Bioinformatics 35 (4), 694-695, 2018
862018
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction
MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ...
Scientific reports 6, 37532, 2016
502016
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields
MP Ciemny, AE Badaczewska-Dawid, M Pikuzinska, A Kolinski, ...
International journal of molecular sciences 20 (3), 606, 2019
462019
Highly flexible protein-peptide docking using CABS-dock
MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik
Modeling Peptide-Protein Interactions: Methods and Protocols, 69-94, 2017
422017
Protein–peptide docking using CABS-dock and contact information
M Blaszczyk, MP Ciemny, A Kolinski, M Kurcinski, S Kmiecik
Briefings in Bioinformatics, 2018
392018
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif
MP Ciemny, M Kurcinski, M Blaszczyk, A Kolinski, S Kmiecik
Biomedical engineering online 16 (1), 71, 2017
152017
A protocol for CABS-dock protein–peptide docking driven by side-chain contact information
M Kurcinski, M Blaszczyk, MP Ciemny, A Kolinski, S Kmiecik
Biomedical engineering online 16 (1), 73, 2017
112017
Protein Structure Prediction Using Coarse-Grained Models
M Blaszczyk, D Gront, S Kmiecik, M Kurcinski, M Kolinski, MP Ciemny, ...
Computational Methods to Study the Structure and Dynamics of Biomolecules …, 2019
42019
Flexible protein-peptide docking using CABS-dock with knowledge about the binding site
M Kurcinski, MP Ciemny, M Blaszczyk, A Kolinski, S Kmiecik
arXiv preprint arXiv:1605.09269, 2016
12016
Towards protein-protein docking with significant structural changes using CABS-dock
MP Ciemny, M Kurcinski, A Kolinski, S Kmiecik
arXiv preprint arXiv:1605.09266, 2016
2016
The system can't perform the operation now. Try again later.
Articles 1–12