| SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019 | 3584 | 2019 |
| DeepLoc: prediction of protein subcellular localization using deep learning JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ... Bioinformatics 33 (21), 3387-3395, 2017 | 1015 | 2017 |
| SignalP 6.0 predicts all five types of signal peptides using protein language models F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ... Nature biotechnology 40 (7), 1023-1025, 2022 | 1005 | 2022 |
| Detecting sequence signals in targeting peptides using deep learning JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ... Life science alliance 2 (5), 2019 | 689 | 2019 |
| DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks J Hallgren, KD Tsirigos, MD Pedersen, JJ Almagro Armenteros, ... BioRxiv, 2022.04. 08.487609, 2022 | 436 | 2022 |
| Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021 | 292 | 2021 |
| DeepLoc 2.0: multi-label subcellular localization prediction using protein language models V Thumuluri, JJ Almagro Armenteros, AR Johansen, H Nielsen, O Winther Nucleic Acids Research 50 (W1), W228-W234, 2022 | 209 | 2022 |
| An introduction to deep learning on biological sequence data: examples and solutions VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ... Bioinformatics 33 (22), 3685-3690, 2017 | 172 | 2017 |
| Modeling of waning immunity after SARS-CoV-2 vaccination and influencing factors L Pérez-Alós, JJA Armenteros, JR Madsen, CB Hansen, I Jarlhelt, ... Nature communications 13 (1), 1614, 2022 | 141 | 2022 |
| Prediction of GPI-anchored proteins with pointer neural networks MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen Current Research in Biotechnology 3, 6-13, 2021 | 72 | 2021 |
| Decline in antibody concentration 6 months after two doses of SARS-CoV-2 BNT162b2 vaccine in solid organ transplant recipients and healthy controls SR Hamm, DL Møller, L Pérez-Alós, CB Hansen, MM Pries-Heje, ... Frontiers in Immunology 13, 832501, 2022 | 31 | 2022 |
| NetSolP: predicting protein solubility in Escherichia coli using language models V Thumuluri, HM Martiny, JJ Almagro Armenteros, J Salomon, H Nielsen, ... Bioinformatics 38 (4), 941-946, 2022 | 24 | 2022 |
| Language modelling for biological sequences–curated datasets and baselines JJ Almagro Armenteros, AR Johansen, O Winther, H Nielsen BioRxiv, 2020.03. 09.983585, 2020 | 19 | 2020 |
| Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii KH Iversen, LH Rasmussen, K Al-Nakeeb, JJA Armenteros, CS Jensen, ... Scientific Reports 10 (1), 2728, 2020 | 17 | 2020 |
| Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk L Pérez-Alós, CB Hansen, JJ Almagro Armenteros, JR Madsen, ... Nature Communications 14 (1), 5624, 2023 | 12 | 2023 |
| Temporal dynamics of the multi-omic response to endurance exercise training across tissues MoTrPAC Study Group, D Amar, NR Gay, PM Jean Beltran, JN Adkins, ... BioRxiv, 2022.09. 21.508770, 2022 | 12 | 2022 |
| Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases ZB Harboe, SR Hamm, L Pérez-Alós, P Sivapalan, H Priemé, T Wilcke, ... BMJ open respiratory research 9 (1), e001268, 2022 | 11 | 2022 |
| Factors influencing the immune response over 15 months after SARS‐CoV‐2 infection: A longitudinal population‐wide study in the Faroe Islands MS Petersen, L Pérez‐Alós, JJA Armenteros, CB Hansen, JP Fjallsbak, ... Journal of Internal Medicine 293 (1), 63-81, 2023 | 10 | 2023 |
| GraphPart: homology partitioning for biological sequence analysis F Teufel, MH Gíslason, JJ Almagro Armenteros, AR Johansen, O Winther, ... NAR genomics and bioinformatics 5 (4), lqad088, 2023 | 8 | 2023 |
| Humoral and T-cell response 12 months after the first BNT162b2 vaccination in solid organ transplant recipients and controls: Kinetics, associated factors, and role of SARS-CoV … O Rezahosseini, SR Hamm, LD Heftdal, L Pérez-Alós, DL Møller, M Perch, ... Frontiers in immunology 13, 1075423, 2023 | 8 | 2023 |
Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of Denmark在 bio.ku.dk 的電子郵件地址已通過驗證
