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Justin O'Grady
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Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
13592018
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
7642021
SARS-CoV-2 evolution during treatment of chronic infection
SA Kemp, DA Collier, RP Datir, IATM Ferreira, S Gayed, A Jahun, ...
Nature 592 (7853), 277-282, 2021
5542021
Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
MedRxiv, 2020.12. 30.20249034, 2021
5472021
Sensitivity of SARS-CoV-2 B. 1.1. 7 to mRNA vaccine-elicited antibodies
DA Collier, A De Marco, IATM Ferreira, B Meng, RP Datir, AC Walls, ...
Nature 593 (7857), 136-141, 2021
4952021
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ...
Nature biotechnology 33 (3), 296-300, 2015
4372015
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
3262022
Co-infections: potentially lethal and unexplored in COVID-19
MJ Cox, N Loman, D Bogaert, J O'Grady
The Lancet Microbe 1 (1), e11, 2020
3032020
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
2712015
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection
T Charalampous, GL Kay, H Richardson, A Aydin, R Baldan, C Jeanes, ...
Nature biotechnology 37 (7), 783-792, 2019
2452019
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K Schmidt, S Mwaigwisya, LC Crossman, M Doumith, D Munroe, C Pires, ...
Journal of Antimicrobial Chemotherapy 72 (1), 104-114, 2016
2422016
Tuberculosis diagnostics and biomarkers: needs, challenges, recent advances, and opportunities
R McNerney, M Maeurer, I Abubakar, B Marais, TD Mchugh, N Ford, ...
Journal of Infectious Diseases 205 (suppl_2), S147-S158, 2012
2342012
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
2302021
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
2222021
Rapid and accurate detection of Mycobacterium tuberculosis in sputum samples by Cepheid Xpert MTB/RIF assay—a clinical validation study
A Rachow, A Zumla, N Heinrich, G Rojas-Ponce, B Mtafya, K Reither, ...
PloS one 6 (6), e20458, 2011
2132011
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 109292, 2021
2082021
Drug-resistant tuberculosis—current dilemmas, unanswered questions, challenges, and priority needs
A Zumla, I Abubakar, M Raviglione, M Hoelscher, L Ditiu, TD Mchugh, ...
Journal of Infectious Diseases 205 (suppl_2), S228-S240, 2012
2052012
Assessment of the Xpert MTB/RIF assay for diagnosis of tuberculosis with gastric lavage aspirates in children in sub-Saharan Africa: a prospective descriptive study
M Bates, J O'Grady, M Maeurer, J Tembo, L Chilukutu, C Chabala, ...
The Lancet Infectious Diseases 13 (1), 36-42, 2013
1812013
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
1742020
Rapid real-time PCR detection of Listeria monocytogenes in enriched food samples based on the ssrA gene, a novel diagnostic target
J O’Grady, S Sedano-Balbás, M Maher, T Smith, T Barry
Food microbiology 25 (1), 75-84, 2008
1662008
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