PRIDE database team
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2016 update of the PRIDE database and its related tools
JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ...
Nucleic acids research 44 (D1), D447-D456, 2016
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Rios, ...
Nature biotechnology 32 (3), 223-226, 2014
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ...
Nucleic acids research 41 (D1), D1063-D1069, 2012
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 …
GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ...
Proteomics 5 (13), 3226-3245, 2005
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
The minimum information about a proteomics experiment (MIAPE)
CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian, AR Jones, W Zhu, ...
Nature biotechnology 25 (8), 887-893, 2007
PRIDE: the proteomics identifications database
L Martens, H Hermjakob, P Jones, M Adamski, C Taylor, D States, ...
Proteomics 5 (13), 3537-3545, 2005
mzML—a community standard for mass spectrometry data
L Martens, M Chambers, M Sturm, D Kessner, F Levander, J Shofstahl, ...
Molecular & Cellular Proteomics 10 (1), 2011
Shorthand notation for lipid structures derived from mass spectrometry
G Liebisch, JA Vizcaíno, H Köfeler, M Trötzmüller, WJ Griffiths, G Schmitz, ...
Journal of lipid research 54 (6), 1523-1530, 2013
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
Clinical proteomics: a need to define the field and to begin to set adequate standards
H Mischak, R Apweiler, RE Banks, M Conaway, J Coon, A Dominiczak, ...
PROTEOMICS–Clinical Applications 1 (2), 148-156, 2007
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ...
Nature methods 6 (6), 423, 2009
PRIDE: a public repository of protein and peptide identifications for the proteomics community
P Jones, RG Côté, L Martens, AF Quinn, CF Taylor, W Derache, ...
Nucleic acids research 34 (suppl_1), D659-D663, 2006
The proteomics identifications database: 2010 update
JA Vizcaíno, R Coˆte, F Reisinger, H Barsnes, JM Foster, J Rameseder, ...
Nucleic acids research 38 (suppl_1), D736-D742, 2010
A guide to the Proteomics Identifications Database proteomics data repository
JA Vizcaíno, R Côté, F Reisinger, J M. Foster, M Mueller, J Rameseder, ...
Proteomics 9 (18), 4276-4283, 2009
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
RG Côté, P Jones, R Apweiler, H Hermjakob
BMC bioinformatics 7 (1), 97, 2006
PRIDE Converter: making proteomics data-sharing easy
H Barsnes, JA Vizcaino, I Eidhammer, L Martens
Nature biotechnology 27 (7), 598-599, 2009
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), 2012
PRIDE: new developments and new datasets
P Jones, RG Coˆte, SY Cho, S Klie, L Martens, AF Quinn, D Thorneycroft, ...
Nucleic acids research 36 (suppl_1), D878-D883, 2007
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