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Jin Yang
Jin Yang
CAS-MPG Partner Institute for Computational Biology, Shanghai, China
Verified email at alumni.rice.edu
Title
Cited by
Cited by
Year
The myogenic response in isolated rat cerebrovascular arteries: smooth muscle cell model
J Yang, JW Clark Jr, RM Bryan, C Robertson
Medical engineering & physics 25 (8), 691-709, 2003
1492003
Kinetic Monte Carlo method for rule-based modeling of biochemical networks
J Yang, MI Monine, JR Faeder, WS Hlavacek
Physical Review E 78 (3), 031910, 2008
1432008
Graph theory for rule-based modeling of biochemical networks
ML Blinov, J Yang, JR Faeder, WS Hlavacek
Transactions on Computational Systems Biology VII, 89-106, 2006
1112006
Mathematical modeling of the nitric oxide/cGMP pathway in the vascular smooth muscle cell
J Yang, JW Clark, RM Bryan, CS Robertson
American Journal of Physiology-Heart and Circulatory Physiology 289 (2 …, 2005
932005
Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics
WJ Bruno, J Yang, JE Pearson
Proceedings of the National Academy of Sciences 102 (18), 6326-6331, 2005
902005
Modelling epidermis homoeostasis and psoriasis pathogenesis
H Zhang, W Hou, L Henrot, S Schnebert, M Dumas, C Heusele, J Yang
Journal of The Royal Society Interface 12 (103), 20141071, 2015
722015
The myogenic response in isolated rat cerebrovascular arteries: vessel model
J Yang, JW Clark Jr, RM Bryan, CS Robertson
Medical engineering & physics 25 (8), 711-717, 2003
672003
On imposing detailed balance in complex reaction mechanisms
J Yang, WJ Bruno, WS Hlavacek, JE Pearson
Biophysical journal 91 (3), 1136-1141, 2006
612006
Guidelines for visualizing and annotating rule-based models
LA Chylek, B Hu, ML Blinov, T Emonet, JR Faeder, B Goldstein, ...
Molecular BioSystems 7 (10), 2779-2795, 2011
572011
A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units
CP Xin, J Yang, XG Zhu
Photosynthesis Research 117, 339-354, 2013
542013
Scaffold-mediated nucleation of protein signaling complexes: elementary principles
J Yang, WS Hlavacek
Mathematical biosciences 232 (2), 164-173, 2011
372011
Robustness of the signal transduction system of the mammalian JAK/STAT pathway and dimerization steps
E Shudo, J Yang, A Yoshimura, Y Iwasa
Journal of theoretical biology 246 (1), 1-9, 2007
242007
Depicting signaling cascades
ML Blinov, J Yang, JR Faeder, WS Hlavacek
Nature biotechnology 24 (2), 137-138, 2006
222006
The efficiency of reactant site sampling in network-free simulation of rule-based models for biochemical systems
J Yang, WS Hlavacek
Physical biology 8 (5), 055009, 2011
212011
Rule-based modelling and simulation of biochemical systems with molecular finite automata
J Yang, X Meng, WS Hlavacek
IET systems biology 4 (6), 453-466, 2010
212010
'On-the-fly'or'generate-first'modeling?
ML Blinov, JR Faeder, J Yang, B Goldstein, WS Hlavacek
Nature Biotechnology 23 (11), 1344-1345, 2005
212005
Origins of concentration dependence of waiting times for single-molecule fluorescence binding
J Yang, JE Pearson
The Journal of Chemical Physics 136 (24), 2012
62012
Monte Carlo algorithm for simulating reversible aggregation of multisite particles
Q Chang, J Yang
Physical Review E 83 (5), 056701, 2011
52011
On the roles of vascular smooth muscle contraction in cerebral blood flow autoregulation-a modeling perspective
J Yang, JW Clark
2015 37th Annual International Conference of the IEEE Engineering in …, 2015
22015
Directional sensing by cooperative chemoreceptor arrays modeled as Monod-Wyman-Changeux clusters
J Yang
Physical Review E 87 (3), 032718, 2013
22013
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Articles 1–20