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sergio contrino
sergio contrino
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Year
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
11242010
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10862010
ArrayExpress—a public repository for microarray gene expression data at the EBI
H Parkinson, U Sarkans, M Shojatalab, N Abeygunawardena, S Contrino, ...
Nucleic acids research 33 (suppl_1), D553-D555, 2005
4692005
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data
RN Smith, J Aleksic, D Butano, A Carr, S Contrino, F Hu, M Lyne, R Lyne, ...
Bioinformatics 28 (23), 3163-3165, 2012
2892012
Araport: the Arabidopsis information portal
V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ...
Nucleic acids research 43 (D1), D1003-D1009, 2015
2302015
modMine: flexible access to modENCODE data
S Contrino, RN Smith, D Butano, A Carr, F Hu, R Lyne, K Rutherford, ...
Nucleic acids research 40 (D1), D1082-D1088, 2012
1622012
InterMine: extensive web services for modern biology
A Kalderimis, R Lyne, D Butano, S Contrino, M Lyne, J Heimbach, F Hu, ...
Nucleic acids research 42 (W1), W468-W472, 2014
1252014
ArrayExpress: a public database of gene expression data at EBI
P Rocca-Serra, A Brazma, H Parkinson, U Sarkans, M Shojatalab, ...
Comptes rendus. Biologies 326 (10-11), 1075-1078, 2003
1152003
The ArrayExpress gene expression database: a software engineering and implementation perspective
U Sarkans, H Parkinson, GG Lara, A Oezcimen, A Sharma, ...
Bioinformatics 21 (8), 1495-1501, 2005
682005
ThaleMine: a warehouse for Arabidopsis data integration and discovery
V Krishnakumar, S Contrino, CY Cheng, I Belyaeva, ES Ferlanti, JR Miller, ...
Plant and Cell Physiology 58 (1), e4-e4, 2017
512017
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details
NL Washington, EO Stinson, MD Perry, P Ruzanov, S Contrino, R Smith, ...
Database 2011, bar023, 2011
482011
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+ TREMBL.
R Apweiler, A Gateau, S Contrino, MJ Martin, V Junker, C O'Donovan, ...
Ismb 5, 33-43, 1997
451997
The role SWISS-PROT and TrEMBL play in the genome research environment
V Junker, S Contrino, W Fleischmann, H Hermjakob, F Lang, M Magrane, ...
Journal of Biotechnology 78 (3), 221-234, 2000
362000
Cross‐organism analysis using InterMine
R Lyne, J Sullivan, D Butano, S Contrino, J Heimbach, F Hu, A Kalderimis, ...
genesis 53 (8), 547-560, 2015
312015
COM e: the ontology of bioinorganic proteins
K Degtyarenko, S Contrino
BMC Structural Biology 4, 1-10, 2004
252004
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
G Mukherjee, N Abeygunawardena, H Parkinson, S Contrino, S Durinck, ...
Plant physiology 139 (2), 632-636, 2005
92005
Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE
QM Trinh, FYA Jen, Z Zhou, KM Chu, MD Perry, ET Kephart, S Contrino, ...
BMC genomics 14, 1-9, 2013
82013
SWISS-PROT and its computer-annotated supplement TrEMBL: how to produce high-quality automatic annotation
R Apweiler, C O’Donovan, MJ Martin, W Fleischmann, H Hermjakob, ...
Systems, Cybernetics and Informatics, Orlando, Florida, IIIS, 1998
51998
HumanMine: advanced data searching, analysis and cross-species comparison
R Lyne, A Bazaga, D Butano, S Contrino, J Heimbach, F Hu, A Kalderimis, ...
Database 2022, baac054, 2022
42022
Making linked data SPARQL with the InterMine biological data warehouse
M Déraspe, G Binkley, D Butano, M Chadwick, JM Cherry, J Clark-Casey, ...
CEUR Workshop Proceedings 1795, 2016
22016
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