Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations W Zheng, C Zhang, Y Li, R Pearce, EW Bell, Y Zhang Cell reports methods 1 (3), 2021 | 461 | 2021 |
VEGFR-3 controls tip to stalk conversion at vessel fusion sites by reinforcing Notch signalling T Tammela, G Zarkada, H Nurmi, L Jakobsson, K Heinolainen, ... Nature cell biology 13 (10), 1202-1213, 2011 | 379 | 2011 |
HUMAN IMPACTS HAVE SHAPED HISTORICAL AND RECENT EVOLUTION IN AEDES AEGYPTI, THE DENGUE AND YELLOW FEVER MOSQUITO JE Brown, BR Evans, W Zheng, V Obas, L Barrera-Martinez, A Egizi, ... Evolution 68 (2), 514-525, 2014 | 369 | 2014 |
The landscape of recombination in African Americans AG Hinch, A Tandon, N Patterson, Y Song, N Rohland, CD Palmer, ... Nature 476 (7359), 170-175, 2011 | 367 | 2011 |
Protein structure and sequence reanalysis of 2019-nCoV genome refutes snakes as its intermediate host and the unique similarity between its spike protein insertions and HIV-1 C Zhang, W Zheng, X Huang, EW Bell, X Zhou, Y Zhang Journal of proteome research 19 (4), 1351-1360, 2020 | 366 | 2020 |
Lymphangiogenic factors, mechanisms, and applications W Zheng, A Aspelund, K Alitalo The Journal of clinical investigation 124 (3), 878-887, 2014 | 335 | 2014 |
dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks P Jia, S Zheng, J Long, W Zheng, Z Zhao Bioinformatics 27 (1), 95-102, 2011 | 307 | 2011 |
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang Nature Protocols 17 (10), 2326-2353, 2022 | 274 | 2022 |
Deeplearning contactmap guided protein structure prediction in CASP13 W Zheng, Y Li, C Zhang, R Pearce, SM Mortuza, Y Zhang Proteins: Structure, Function, and Bioinformatics 87 (12), 1149-1164, 2019 | 222 | 2019 |
Bias detection and correction in RNA-Sequencing data W Zheng, LM Chung, H Zhao BMC bioinformatics 12, 1-14, 2011 | 212 | 2011 |
VEGFC is required for intestinal lymphatic vessel maintenance and lipid absorption H Nurmi, P Saharinen, G Zarkada, W Zheng, MR Robciuc, K Alitalo EMBO molecular medicine 7 (11), 1418-1425, 2015 | 208 | 2015 |
Genetic analysis of variation in transcription factor binding in yeast W Zheng, H Zhao, E Mancera, LM Steinmetz, M Snyder Nature 464 (7292), 1187-1191, 2010 | 208 | 2010 |
Effective suppression of vascular network formation by combination of antibodies blocking VEGFR ligand binding and receptor dimerization D Tvorogov, A Anisimov, W Zheng, VM Leppänen, T Tammela, ... Cancer cell 18 (6), 630-640, 2010 | 179 | 2010 |
Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast Q Guan, W Zheng, S Tang, X Liu, RA Zinkel, KW Tsui, BS Yandell, ... PLoS genetics 2 (11), e203, 2006 | 176 | 2006 |
DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins C Zhang, W Zheng, SM Mortuza, Y Li, Y Zhang Bioinformatics 36 (7), 2105-2112, 2020 | 168 | 2020 |
A large-scale multi-ancestry genome-wide study accounting for smoking behavior identifies multiple significant loci for blood pressure YJ Sung, TW Winkler, L de Las Fuentes, AR Bentley, MR Brown, AT Kraja, ... The American Journal of Human Genetics 102 (3), 375-400, 2018 | 163 | 2018 |
LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins W Zheng, C Zhang, Q Wuyun, R Pearce, Y Li, Y Zhang Nucleic acids research 47 (W1), W429-W436, 2019 | 154 | 2019 |
Pumilio 1 Suppresses Multiple Activators of p53 to Safeguard Spermatogenesis LH Chen D, Zheng W, Lin A, Uyhazi K, Zhao H Current Biology 22 (5), 420, 2012 | 152 | 2012 |
Data quality matters: A case study on data label correctness for security bug report prediction X Wu, W Zheng, X Xia, D Lo IEEE Transactions on Software Engineering 48 (7), 2541-2556, 2021 | 148 | 2021 |
Carbon dots for efficient small interfering RNA delivery and gene silencing in plants SH Schwartz, B Hendrix, P Hoffer, RA Sanders, W Zheng Plant physiology 184 (2), 647-657, 2020 | 148 | 2020 |