Elif Ozkirimli

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	All	Since 2016
Citations	812	609
h-index	14	12
i10-index	20	17

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2007200820092010201120122013201420152016201720182019202020214 10 25 17 27 29 26 26 37 40 62 98 134 227 47

Co-authors

Berna Sariyar AkbulutMarmara UniversityVerified email at marmara.edu.tr
Arzucan OzgurDepartment of Computer Engineering, Bogazici UniversityVerified email at boun.edu.tr
Hakime ÖztürkGerman Cancer Research Center (DKFZ)Verified email at dkfz-heidelberg.de
Fatma Gizem AvcıÜsküdar ÜniversitesiVerified email at uskudar.edu.tr
Begum AlaybeyogluMassachusetts Institute of TechnologyVerified email at mit.edu
Kutlu O. UlgenProfessor of Chemical Engineering, Bogazici UniversityVerified email at boun.edu.tr
Pinar KanlikilicerMD Anderson Cancer CenterVerified email at mdanderson.org
Burak AlakentAssociate Professor of Chemical Engineering, Bogazici UniversityVerified email at boun.edu.tr
Nihat Alpagu SayarAssociate Professor of Bioengineering, Marmara UniversityVerified email at marmara.edu.tr
W. Todd MillerProfessor of Physiology and Biophysics, Stony Brook UniversityVerified email at stonybrook.edu
Deniz Meneksedag Erol, PhDAssistant Professor at Concordia UniversityVerified email at concordia.ca
Didem Vardar-UluVerified email at wellesley.edu
Robert GeahlenDistinguished Professor of Medicinal Chemistry, Purdue UniversityVerified email at purdue.edu
Kavita ShahPurdueVerified email at purdue.edu
Fatma Ece Altınışık KayaMarmara ÜniversitesiVerified email at marmara.edu.tr
Naze Gul AvciDepartment of Biomedical Engineering, University of HoustonVerified email at uh.edu
Philippe SchwallerIBM Research Europe / University of BernVerified email at zurich.ibm.com
Teodoro LainoIBM Research ZurichVerified email at zurich.ibm.com
Atakan YukselBoğaziçi UniversityVerified email at boun.edu.tr
Ozlem KeskinProf of Chemical & Biological Engineering, Koc University, Istanbul TurkeyVerified email at ku.edu.tr

Elif Ozkirimli

Head of Data Science and Advanced Analytics, Roche

Verified email at boun.edu.tr

Bioinformatics Computational Biology Structural Biology Natural Language Processing


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
DeepDTA: deep drug–target binding affinity prediction H Öztürk, A Özgür, E Ozkirimli Bioinformatics 34 (17), i821-i829, 2018	153	2018
Src kinase activation: A switched electrostatic network E Ozkirimli, CB Post Protein Science 15 (5), 1051-1062, 2006	76	2006
An electrostatic network and long‐range regulation of Src kinases E Ozkirimli, SS Yadav, WT Miller, CB Post Protein Science 17 (11), 1871-1880, 2008	67	2008
Classification of beta-lactamases and penicillin binding proteins using ligand-centric network models H Öztürk, E Ozkirimli, A Özgür PloS one 10 (2), e0117874, 2015	65	2015
Comparison of three perturbation molecular dynamics methods for modeling conformational transitions H Huang, E Ozkirimli, CB Post Journal of chemical theory and computation 5 (5), 1304-1314, 2009	53	2009
Membrane active peptides and their biophysical characterization FG Avci, B Sariyar Akbulut, E Ozkirimli Biomolecules 8 (3), 77, 2018	50	2018
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction H Öztürk, E Ozkirimli, A Özgür BMC bioinformatics 17 (1), 1-11, 2016	49	2016
Generation of an analog-sensitive Syk tyrosine kinase for the study of signaling dynamics from the B cell antigen receptor H Oh, E Ozkirimli, K Shah, ML Harrison, RL Geahlen Journal of Biological Chemistry 282 (46), 33760-33768, 2007	35	2007
The uptake mechanism of the cell penetrating pVEC peptide IO Akdag, E Ozkirimli	24	2013
Alpha7 helix plays an important role in the conformational stability of PTP1B E Ozkirimli Olmez, B Alakent Journal of Biomolecular Structure and Dynamics 28 (5), 675-693, 2011	24	2011
A novel methodology on distributed representations of proteins using their interacting ligands H Öztürk, E Ozkirimli, A Özgür Bioinformatics 34 (13), i295-i303, 2018	15	2018
Exploring chemical space using natural language processing methodologies for drug discovery H Öztürk, A Özgür, P Schwaller, T Laino, E Ozkirimli Drug discovery today 25 (4), 689-705, 2020	14	2020
Response of Escherichia coli to Prolonged Berberine Exposure N Budeyri Gokgoz, FG Avci, KK Yoneten, B Alaybeyoglu, E Ozkirimli, ... Microbial Drug Resistance 23 (5), 531-544, 2017	14	2017
Protein-peptide interactions revolutionize drug development E Ozkirimli Olmez, B Sariyar Akbulut Binding Protein, 49, 2012	14*	2012
Communication between the active site and the allosteric site in class A beta-lactamases D Meneksedag, A Dogan, P Kanlikilicer, E Ozkirimli Computational biology and chemistry 43, 1-10, 2013	13	2013
WideDTA: prediction of drug-target binding affinity H Öztürk, E Ozkirimli, A Özgür arXiv preprint arXiv:1902.04166, 2019	12	2019
A systematic methodology for large scale compound screening: A case study on the discovery of novel S1PL inhibitors U Deniz, E Ozkirimli, KO Ulgen Journal of Molecular Graphics and Modelling 63, 110-124, 2016	12	2016
Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening OG Yilmaz, E Ozkirimli Olmez, KO Ulgen Computational biology and chemistry 48, 1-13, 2014	12	2014
An evolutionarily conserved allosteric site modulates beta-lactamase activity FG Avci, FE Altinisik, D Vardar Ulu, E Ozkirimli Olmez, B Sariyar Akbulut Journal of enzyme inhibition and medicinal chemistry 31 (sup3), 33-40, 2016	11	2016
A novel chimeric peptide with antimicrobial activity B Alaybeyoglu, B Sariyar Akbulut, E Ozkirimli Journal of Peptide Science 21 (4), 294-301, 2015	10	2015

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