Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 63 | 2023 |
A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380 (6643), eabl8189, 2023 | 41 | 2023 |
Integrating gene annotation with orthology inference at scale BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ... Science 380 (6643), eabn3107, 2023 | 36 | 2023 |
Leveraging base-pair mammalian constraint to understand genetic variation and human disease PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ... Science 380 (6643), eabn2937, 2023 | 34 | 2023 |
Phylogenomics and the genetic architecture of the placental mammal radiation WJ Murphy, NM Foley, KR Bredemeyer, J Gatesy, MS Springer Annual Review of Animal Biosciences 9, 29-53, 2021 | 34 | 2021 |
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis) KR Bredemeyer, AJ Harris, G Li, L Zhao, NM Foley, M Roelke-Parker, ... Journal of Heredity 112 (2), 165-173, 2021 | 32 | 2021 |
Three-dimensional genome rewiring in loci with human accelerated regions KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair, C Deng, M Steyert, ... Science 380 (6643), eabm1696, 2023 | 26 | 2023 |
Insights into mammalian TE diversity through the curation of 248 genome assemblies AB Osmanski, NS Paulat, J Korstian, JR Grimshaw, M Halsey, ... Science 380 (6643), eabn1430, 2023 | 24 | 2023 |
Mammalian evolution of human cis-regulatory elements and transcription factor binding sites G Andrews, K Fan, HE Pratt, N Phalke, Zoonomia Consortium §, ... Science 380 (6643), eabn7930, 2023 | 23 | 2023 |
Relating enhancer genetic variation across mammals to complex phenotypes using machine learning IM Kaplow, AJ Lawler, DE Schäffer, C Srinivasan, HH Sestili, ME Wirthlin, ... Science 380 (6643), eabm7993, 2023 | 23 | 2023 |
The contribution of historical processes to contemporary extinction risk in placental mammals AP Wilder, MA Supple, A Subramanian, A Mudide, R Swofford, ... Science 380 (6643), eabn5856, 2023 | 22 | 2023 |
Genomic architecture constrained placental mammal X Chromosome evolution WA Brashear, KR Bredemeyer, WJ Murphy Genome Research 31 (8), 1353-1365, 2021 | 16 | 2021 |
The functional and evolutionary impacts of human-specific deletions in conserved elements JR Xue, A Mackay-Smith, K Mouri, MF Garcia, MX Dong, JF Akers, ... Science 380 (6643), eabn2253, 2023 | 15 | 2023 |
An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the UBE3A-AS transcript SV Dindot, S Christian, WJ Murphy, A Berent, J Panagoulias, A Schlafer, ... Science Translational Medicine 15 (688), eabf4077, 2023 | 11 | 2023 |
Rapid macrosatellite evolution promotes X-linked hybrid male sterility in a feline interspecies cross KR Bredemeyer, CM Seabury, MJ Stickney, JR McCarrey, BM VonHoldt, ... Molecular biology and evolution 38 (12), 5588-5609, 2021 | 8 | 2021 |
Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution KR Bredemeyer, LD Hillier, AJ Harris, GM Hughes, NM Foley, C Lawless, ... Nature genetics 55 (11), 1953-1963, 2023 | 6 | 2023 |
Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs KL Moon, HJ Huson, K Morrill, MS Wang, X Li, K Srikanth, ... Science 380 (6643), eabn5887, 2023 | 6 | 2023 |
Springer MS and Murphy WJ. 2023. A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380, 1-9, 0 | 6 | |
Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements ME Wirthlin, TA Schmid, JE Elie, X Zhang, A Kowalczyk, R Redlich, ... Science, eabn3263, 2024 | 5 | 2024 |
Development of an ASO therapy for Angelman syndrome by targeting an evolutionarily conserved region at the start of the UBE3A-AS transcript SV Dindot, S Christian, WJ Murphy, A Berent, J Panagoulias, A Schlafer, ... bioRxiv, 2021.07. 27.453820, 2021 | 4 | 2021 |