| Coding exons function as tissue-specific enhancers of nearby genes RY Birnbaum, EJ Clowney, O Agamy, MJ Kim, J Zhao, T Yamanaka, ... Genome research 22 (6), 1059-1068, 2012 | 254 | 2012 |
| lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements MG Gordon, F Inoue, B Martin, M Schubach, V Agarwal, S Whalen, ... Nature protocols 15 (8), 2387-2412, 2020 | 73 | 2020 |
| Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus BM Booker, T Friedrich, MK Mason, JE VanderMeer, J Zhao, WL Eckalbar, ... PLoS genetics 12 (3), e1005738, 2016 | 62 | 2016 |
| Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia A Ushiki, Y Zhang, C Xiong, J Zhao, I Georgakopoulos-Soares, L Kane, ... Nature communications 12 (1), 2282, 2021 | 44 | 2021 |
| Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation RY Birnbaum, RP Patwardhan, MJ Kim, GM Findlay, B Martin, J Zhao, ... PLoS Genetics 10 (10), e1004592, 2014 | 39 | 2014 |
| Distinct nuclear compartment-associated genome architecture in the developing mammalian brain SH Ahanger, RN Delgado, E Gil, MA Cole, J Zhao, SJ Hong, ... Nature neuroscience 24 (9), 1235-1242, 2021 | 32 | 2021 |
| Dysregulation of STAT3 signaling is associated with endplate-oriented herniations of the intervertebral disc in Adgrg6 mutant mice Z Liu, GWD Easson, J Zhao, N Makki, N Ahituv, MJ Hilton, SY Tang, ... PLoS genetics 15 (10), e1008096, 2019 | 24 | 2019 |
| High-throughput characterization of the role of non-B DNA motifs on promoter function I Georgakopoulos-Soares, J Victorino, GE Parada, V Agarwal, J Zhao, ... Cell genomics 2 (4), 2022 | 23 | 2022 |
| PageRank analysis reveals topologically expressed genes correspond to psoriasis and their functions are associated with apoptosis resistance X Zeng, J Zhao, X Wu, H Shi, W Liu, B Cui, L Yang, X Ding, P Song Molecular medicine reports 13 (5), 3969-3976, 2016 | 20 | 2016 |
| Genomic characterization of the adolescent idiopathic scoliosis-associated transcriptome and regulome N Makki, J Zhao, Z Liu, WL Eckalbar, A Ushiki, AM Khanshour, J Wu, ... Human molecular genetics 29 (22), 3606-3615, 2020 | 16 | 2020 |
| Transcription factor binding site orientation and order are major drivers of gene regulatory activity I Georgakopoulos-Soares, C Deng, V Agarwal, CSY Chan, J Zhao, ... Nature communications 14 (1), 2333, 2023 | 12 | 2023 |
| CRISPR activation rescues abnormalities in SCN2A haploinsufficiency-associated autism spectrum disorder S Tamura, AD Nelson, PWE Spratt, H Kyoung, X Zhou, Z Li, J Zhao, ... BioRxiv, 2022.03. 30.486483, 2022 | 12 | 2022 |
| AKT1 as the PageRank hub gene is associated with melanoma and its functional annotation is highly related to the estrogen signaling pathway that may regulate the growth of melanoma J Zhao, X Zeng, P Song, X Wu, H Shi Oncology Reports 36 (4), 2087-2093, 2016 | 11 | 2016 |
| Classification of topological domains based on gene expression and regulation J Zhao, H Shi, N Ahituv Genome 56 (7), 415-423, 2013 | 3 | 2013 |
| Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality A Ushiki, RR Sheng, Y Zhang, J Zhao, M Nobuhara, E Murray, X Ruan, ... Cell reports 43 (3), 2024 | 1 | 2024 |
| MPRAbase: A Massively Parallel Reporter Assay Database J Zhao, FA Baltoumas, MA Konnaris, I Mouratidis, Z Liu, J Sims, ... bioRxiv, 2023 | | 2023 |
| Homeostasis of the intervertebral disc requires regulation of STAT3 signaling by the adhesion G-protein coupled receptor ADGRG6 Z Liu, GWD Easson, J Zhao, N Makki, N Ahituv, MJ Hilton, SY Tang, ... bioRxiv, 581595, 2019 | | 2019 |
| Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus K Pollard, BM Booker, T Friedrich, MK Mason, JE VanderMeer, J Zhao, ... | | 2016 |
