Stephan Uphoff
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DAOSTORM: an algorithm for high-density super-resolution microscopy
SJ Holden, S Uphoff, AN Kapanidis
Nature methods 8 (4), 279-280, 2011
In vivo architecture and action of bacterial structural maintenance of chromosome proteins
A Badrinarayanan, R Reyes-Lamothe, S Uphoff, MC Leake, DJ Sherratt
Science 338 (6106), 528-531, 2012
Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid
M Stracy, C Lesterlin, FG De Leon, S Uphoff, P Zawadzki, AN Kapanidis
Proceedings of the National Academy of Sciences 112 (32), E4390-E4399, 2015
Defining the limits of single-molecule FRET resolution in TIRF microscopy
SJ Holden, S Uphoff, J Hohlbein, D Yadin, L Le Reste, OJ Britton, ...
Biophysical journal 99 (9), 3102-3111, 2010
Single-molecule DNA repair in live bacteria
S Uphoff, R Reyes-Lamothe, FG de Leon, DJ Sherratt, AN Kapanidis
Proceedings of the National Academy of Sciences 110 (20), 8063-8068, 2013
Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison
E Wegel, A Göhler, BC Lagerholm, A Wainman, S Uphoff, R Kaufmann, ...
Scientific reports 6 (1), 1-13, 2016
Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation
S Uphoff, ND Lord, B Okumus, L Potvin-Trottier, DJ Sherratt, J Paulsson
Science 351 (6277), 1094-1097, 2016
Monitoring multiple distances within a single molecule using switchable FRET
S Uphoff, SJ Holden, L Le Reste, J Periz, S Van De Linde, M Heilemann, ...
Nature methods 7 (10), 831-836, 2010
Frequent exchange of the DNA polymerase during bacterial chromosome replication
TR Beattie, N Kapadia, E Nicolas, S Uphoff, AJM Wollman, MC Leake, ...
Elife 6, e21763, 2017
Long-lived intracellular single-molecule fluorescence using electroporated molecules
R Crawford, JP Torella, L Aigrain, A Plochowietz, K Gryte, S Uphoff, ...
Biophysical journal 105 (11), 2439-2450, 2013
Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli
M Stracy, M Jaciuk, S Uphoff, AN Kapanidis, M Nowotny, DJ Sherratt, ...
Nature communications 7 (1), 1-9, 2016
Scc2/Nipbl hops between chromosomal cohesin rings after loading
J Rhodes, D Mazza, K Nasmyth, S Uphoff
Elife 6, e30000, 2017
In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair
M Stracy, S Uphoff, FG de Leon, AN Kapanidis
FEBS letters 588 (19), 3585-3594, 2014
The SMC complex MukBEF recruits topoisomerase IV to the origin of replication region in live Escherichia coli
E Nicolas, AL Upton, S Uphoff, O Henry, A Badrinarayanan, D Sherratt
MBio 5 (1), e01001-13, 2014
Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells
S Uphoff
Proceedings of the National Academy of Sciences 115 (28), E6516-E6525, 2018
Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes
N Banaz, J Mäkelä, S Uphoff
Journal of physics D: Applied physics 52 (6), 064002, 2018
Understanding protein mobility in bacteria by tracking single molecules
AN Kapanidis, S Uphoff, M Stracy
Journal of molecular biology 430 (22), 4443-4455, 2018
Studying the organization of DNA repair by single-cell and single-molecule imaging
S Uphoff, AN Kapanidis
DNA repair 20, 32-40, 2014
Visualizing protein-DNA interactions in live bacterial cells using photoactivated single-molecule tracking
S Uphoff, DJ Sherratt, AN Kapanidis
Journal of visualized experiments: JoVE, 2014
Improved Temporal Resolution and Linked Hidden Markov Modeling for Switchable Single‐Molecule FRET
S Uphoff, K Gryte, G Evans, AN Kapanidis
ChemPhysChem 12 (3), 571-579, 2011
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Articles 1–20