|Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality|
E Zotenko, J Mestre, DP O'Leary, TM Przytycka
PLoS computational biology 4 (8), 2008
|Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling|
R Pidsley, E Zotenko, TJ Peters, MG Lawrence, GP Risbridger, P Molloy, ...
Genome biology 17 (1), 208, 2016
|Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations|
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
|Predicting domain-domain interactions using a parsimony approach|
KS Guimar„es, R Jothi, E Zotenko, TM Przytycka
Genome biology 7 (11), R104, 2006
|Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value|
C Stirzaker, E Zotenko, JZ Song, W Qu, SS Nair, WJ Locke, A Stone, ...
Nature communications 6 (1), 1-11, 2015
|COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations|
R Jothi, E Zotenko, A Tasneem, TM Przytycka
Bioinformatics 22 (7), 779-788, 2006
|Identification of sequence–structure RNA binding motifs for SELEX-derived aptamers|
J Hoinka, E Zotenko, A Friedman, ZE Sauna, TM Przytycka
Bioinformatics 28 (12), i215-i223, 2012
|DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer|
A Stone, E Zotenko, WJ Locke, D Korbie, EKA Millar, R Pidsley, ...
Nature communications 6 (1), 1-9, 2015
|Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations|
E Zotenko, KS Guimar„es, R Jothi, TM Przytycka
Algorithms for Molecular Biology 1 (1), 7, 2006
|A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer|
AK Clark, AV Taubenberger, RA Taylor, B Niranjan, ZY Chea, E Zotenko, ...
Biomaterials 34 (20), 4777-4785, 2013
|Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA|
K Skvortsova, E Zotenko, PL Luu, CM Gould, SS Nair, SJ Clark, ...
Epigenetics & chromatin 10 (1), 16, 2017
|MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene|
YW Phua, A Nguyen, DL Roden, B Elsworth, N Deng, I Nikolic, J Yang, ...
Breast Cancer Research 17 (1), 83, 2015
|Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer|
C Stirzaker, JZ Song, W Ng, Q Du, NJ Armstrong, WJ Locke, AL Statham, ...
Oncogene 36 (10), 1328-1338, 2017
|Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification|
E Zotenko, DP O'Leary, TM Przytycka
BMC structural biology 6 (1), 12, 2006
|Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis|
WJ Locke, E Zotenko, C Stirzaker, MD Robinson, RA Hinshelwood, ...
Clinical epigenetics 7 (1), 52, 2015
|On the applicability of elastic network normal modes in small-molecule docking|
M Dietzen, E Zotenko, A Hildebrandt, T Lengauer
Journal of chemical information and modeling 52 (3), 844-856, 2012
|Structural footprinting in protein structure comparison: the impact of structural fragments|
E Zotenko, RI Dogan, WJ Wilbur, DP O'Leary, TM Przytycka
BMC Structural Biology 7 (1), 53, 2007
|DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation patterns|
K Skvortsova, E Masle-Farquhar, PL Luu, JZ Song, W Qu, E Zotenko, ...
Cancer cell 35 (2), 297-314. e8, 2019
|Enduring epigenetic landmarks define the cancer microenvironment|
R Pidsley, MG Lawrence, E Zotenko, B Niranjan, A Statham, J Song, ...
Genome research 28 (5), 625-638, 2018
|Inferring physical protein contacts from large-scale purification data of protein complexes|
SE Schelhorn, J Mestre, M Albrecht, E Zotenko
Molecular & Cellular Proteomics 10 (6), 2011