Dan J Woodcock
Dan J Woodcock
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Dynamic analysis of stochastic transcription cycles
CV Harper, B Finkenstädt, DJ Woodcock, S Friedrichsen, S Semprini, ...
PLoS biology 9 (4), e1000607, 2011
Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets
DC Wedge, G Gundem, T Mitchell, DJ Woodcock, I Martincorena, M Ghori, ...
Nature genetics 50 (5), 682-692, 2018
Physiological levels of TNFα stimulation induce stochastic dynamics of NF-κB responses in single living cells
DA Turner, P Paszek, DJ Woodcock, DE Nelson, CA Horton, Y Wang, ...
Journal of cell science 123 (16), 2834-2843, 2010
Spatially resolved clonal copy number alterations in benign and malignant tissue
A Erickson, M He, E Berglund, M Marklund, R Mirzazadeh, N Schultz, ...
Nature 608 (7922), 360-367, 2022
The evolutionary landscape of colorectal tumorigenesis
W Cross, M Kovac, V Mustonen, D Temko, H Davis, AM Baker, S Biswas, ...
Nature ecology & evolution 2 (10), 1661-1672, 2018
Genomic copy number predicts esophageal cancer years before transformation
S Killcoyne, E Gregson, DC Wedge, DJ Woodcock, MD Eldridge, ...
Nature medicine 26 (11), 1726-1732, 2020
Temperature regulates NF-κB dynamics and function through timing of A20 transcription
CV Harper, DJ Woodcock, C Lam, M Garcia-Albornoz, A Adamson, ...
Proceedings of the National Academy of Sciences 115 (22), E5243-E5249, 2018
Lineage‐specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group
G Meric, L Mageiros, B Pascoe, DJ Woodcock, E Mourkas, S Lamble, ...
Molecular ecology 27 (7), 1524-1540, 2018
Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
DJ Woodcock, E Riabchenko, S Taavitsainen, M Kankainen, G Gundem, ...
Nature communications 11 (1), 5070, 2020
The long non‐coding RNA Paupar promotes KAP1‐dependent chromatin changes and regulates olfactory bulb neurogenesis
I Pavlaki, F Alammari, B Sun, N Clark, T Sirey, S Lee, DJ Woodcock, ...
The EMBO journal 37 (10), e98219, 2018
Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: An application to single cell data
B Finkenstädt, DJ Woodcock, M Komorowski, CV Harper, JRE Davis, ...
The Annals of Applied Statistics, 1960-1982, 2013
Genomic plasticity and rapid host switching can promote the evolution of generalism: a case study in the zoonotic pathogen Campylobacter
DJ Woodcock, P Krusche, NJC Strachan, KJ Forbes, FM Cohan, G Méric, ...
Scientific Reports 7 (1), 9650, 2017
Evidence for phenotypic plasticity among multihost Campylobacter jejuni and C. coli lineages, obtained using ribosomal multilocus sequence typing and Raman spectroscopy
DS Read, DJ Woodcock, NJC Strachan, KJ Forbes, FM Colles, ...
Applied and environmental microbiology 79 (3), 965-973, 2013
A systematic review of prostate cancer heterogeneity: understanding the clonal ancestry of multifocal disease
A Erickson, A Hayes, T Rajakumar, C Verrill, RJ Bryant, FC Hamdy, ...
European Urology Oncology 4 (3), 358-369, 2021
Multiplexing information flow through dynamic signalling systems
G Minas, DJ Woodcock, L Ashall, CV Harper, MRH White, DA Rand
PLoS computational biology 16 (8), e1008076, 2020
A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number
DJ Woodcock, KW Vance, M Komorowski, G Koentges, B Finkenstädt, ...
Bioinformatics 29 (12), 1519-1525, 2013
Subclone eradication analysis identifies targets for enhanced cancer therapy and reveals L1 retrotransposition as a dynamic source of cancer heterogeneity
K Ketola, H Kaljunen, S Taavitsainen, R Kaarijärvi, E Järvelä, ...
Cancer research 81 (19), 4901-4909, 2021
The spatial landscape of clonal somatic mutations in benign and malignant tissue
A Erickson, E Berglund, M He, M Marklund, R Mirzazadeh, N Schultz, ...
bioRxiv, 2021.07. 12.452018, 2021
The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates
C Buhigas, AY Warren, WK Leung, HC Whitaker, HJ Luxton, S Hawkins, ...
Molecular cancer 21 (1), 183, 2022
A Bayesian hierarchical diffusion model for estimating kinetic parameters and cell-to-cell variability
DJ Woodcock, M Komorowski, B Finkenstädt, CV Harper, JRE Davis, ...
University of Warwick. Centre for Research in Statistical Methodology 2011 (10), 2011
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Articles 1–20