Francesco Paolo Casale
Francesco Paolo Casale
Microsoft Research
Verified email at microsoft.com
TitleCited byYear
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75, 2015
9542015
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155, 2015
6382015
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), e1000841, 2010
3692010
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
elife 4, e05255, 2015
2112015
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
1972016
Common genetic variation drives molecular heterogeneity in human iPSCs
H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo, S Ashford, S Bala, ...
Nature 546 (7658), 370, 2017
1682017
Efficient set tests for the genetic analysis of correlated traits
FP Casale, B Rakitsch, C Lippert, O Stegle
Nature methods 12 (8), 755, 2015
582015
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 18, 2017
502017
LIMIX: genetic analysis of multiple traits
C Lippert, FP Casale, B Rakitsch, O Stegle
BioRxiv, 2014
402014
Genetic variation in the social environment contributes to health and disease
A Baud, MK Mulligan, FP Casale, JF Ingels, CJ Bohl, J Callebert, ...
PLoS genetics 13 (1), e1006498, 2017
362017
Promoter shape varies across populations and affects promoter evolution and expression noise
IE Schor, JF Degner, D Harnett, E Cannavň, FP Casale, H Shim, ...
Nature genetics 49 (4), 550, 2017
332017
Genetic variants regulating expression levels and isoform diversity during embryogenesis
E Cannavň, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ...
Nature 541 (7637), 402, 2017
282017
A linear mixed-model approach to study multivariate gene–environment interactions
R Moore, FP Casale, MJ Bonder, D Horta, L Franke, I Barroso, O Stegle
Nature genetics 51 (1), 180-186, 2019
122019
The germline genetic component of drug sensitivity in cancer cell lines
MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ...
Nature communications 9 (1), 3385, 2018
92018
Probabilistic neural architecture search
FP Casale, J Gordon, N Fusi
arXiv preprint arXiv:1902.05116, 2019
82019
Joint genetic analysis using variant sets reveals polygenic gene-context interactions
FP Casale, D Horta, B Rakitsch, O Stegle
PLoS genetics 13 (4), e1006693, 2017
82017
Gaussian process prior variational autoencoders
FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi
Advances in Neural Information Processing Systems, 10369-10380, 2018
52018
Single-cell states in the estrogen response of breast cancer cell lines
FP Casale, G Giurato, G Nassa, JW Armond, CJ Oates, D Corá, A Gamba, ...
Plos one 9 (2), e88485, 2014
42014
Interactions between genetic variation and cellular environment in skeletal muscle gene expression
DL Taylor, DA Knowles, LJ Scott, AH Ramirez, FP Casale, BN Wolford, ...
PloS one 13 (4), e0195788, 2018
32018
Genome-wide association study of social genetic effects on 170 phenotypes in laboratory mice
A Baud, FP Casale, J Nicod, O Stegle
bioRxiv, 302349, 2018
32018
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