Xin Gao

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	All	Since 2019
Citations	11649	9626
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hiroyuki kuwaharaResearch Scientist at KAUSTVerified email at kaust.edu.sa
Ming FanHangzhou Dianzi UniversityVerified email at hdu.edu.cn
Juexiao ZhouPhD Candidate, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Jing-Yan WangResearch Scientist, New York UniversityVerified email at nyu.edu
Sheng WangZelixir BiotechVerified email at zelixir.com
Haoyang LiPhD candidate, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Ramzan UmarovPostdoctoral researcher, RIKENVerified email at riken.jp
Xiangliang ZhangLeonard C. Bettex Collegiate Professor, Computer Science and Engineering, University of Notre DameVerified email at nd.edu
Robert HoehndorfKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Xuhui HuangHirschfelder Chair in Theoretical Chemistry, University of Wisconsin-Madison (previously at HKUST)Verified email at chem.wisc.edu
Somayah AlbaradeiPhDVerified email at kaust.edu.sa
Fatima Zohra SmailiMcGill UniversityVerified email at mail.mcgill.ca
Meshari AlazmiAssociate Professor, University of Ha'ilVerified email at kaust.edu.sa
Abdul-Hamid EmwasKAUSTVerified email at kaust.edu.sa
Maha A. ThafarAssistant Professor of Computer Science (CS), Taif University (TU), KUAST AlumniVerified email at kaust.edu.sa
Renmin Han (韩仁敏)Research Center for Mathematics and Interdisciplinary Sciences, Shandong UniversityVerified email at sdu.edu.cn
Stefan AroldProfessor of Bioscience at King Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
Lizhong Ding (丁立中)Inception Institute of Artificial Intelligence (IIAI), Abu Dhabi, UAEVerified email at inceptioniai.org
Wenkai HanKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Peng YangMetaVerified email at fb.com

Xin Gao

Professor, Computer Sciences; Director, Computational Bioscience Research Center

Verified email at kaust.edu.sa - Homepage

Bioinformatics computational biology machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Deep learning in bioinformatics: Introduction, application, and perspective in the big data era Y Li, C Huang, L Ding, Z Li, Y Pan, X Gao Methods 166, 4-21, 2019	390	2019
DEEPre: sequence-based enzyme EC number prediction by deep learning Y Li, S Wang, R Umarov, B Xie, M Fan, L Li, X Gao Bioinformatics, btx680, 2017	285	2017
Bioinformatics clouds for big data manipulation L Dai, X Gao, Y Guo, J Xiao, Z Zhang Biology direct 7 (1), 43, 2012	207	2012
A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis L Zhou, Z Li, J Zhou, H Li, Y Chen, Y Huang, D Xie, L Zhao, M Fan, ... IEEE Transactions on Medical Imaging 39 (8), 2638-2652, 2020	206	2020
Semantic similarity and machine learning with ontologies M Kulmanov, FZ Smaili, X Gao, R Hoehndorf Briefings in Bioinformatics, 2020	182	2020
Towards artificial general intelligence via a multimodal foundation model N Fei, Z Lu, Y Gao, G Yang, Y Huo, J Wen, H Lu, R Song, X Gao, T Xiang, ... Nature Communications 13 (1), 1-13, 2022	181	2022
Recommended strategies for spectral processing and post-processing of 1D ¹H-NMR data of biofluids with a particular focus on urine AH Emwas, E Saccenti, X Gao, RT McKay, VAPM Dos Santos, R Roy, ... Metabolomics 14, 1-23, 2018	170	2018
Recommendations and standardization of biomarker quantification using NMR-based metabolomics with particular focus on urinary analysis AH Emwas, R Roy, RT McKay, D Ryan, L Brennan, L Tenori, C Luchinat, ... Journal of proteome research 15 (2), 360-373, 2016	165	2016
Opa2vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction FZ Smaili, X Gao, R Hoehndorf Bioinformatics 35 (12), 2133-2140, 2019	161	2019
GCN-MF: Disease-Gene Association Identification By Graph Convolutional Networks and Matrix Factorization P Han, P Yang, P Zhao, S Shang, Y Liu, J Zhou, X Gao, P Kalnis Proceedings of the 25th ACM SIGKDD International Conference on Knowledge …, 2019	154	2019
Non-negative matrix factorization by maximizing correntropy for cancer clustering JJY Wang, X Wang, X Gao BMC bioinformatics 14, 1-11, 2013	151	2013
Opportunities and challenges for ChatGPT and large language models in biomedicine and health S Tian, Q Jin, L Yeganova, PT Lai, Q Zhu, X Chen, Y Yang, Q Chen, ... Briefings in Bioinformatics 25 (1), bbad493, 2024	139	2024
Onto2vec: joint vector-based representation of biological entities and their ontology-based annotations FZ Smaili, X Gao, R Hoehndorf Bioinformatics 34 (13), i52-i60, 2018	139	2018
Learning from weak and noisy labels for semantic segmentation Z Lu, Z Fu, T Xiang, P Han, L Wang, X Gao IEEE transactions on pattern analysis and machine intelligence 39 (3), 486-500, 2017	137	2017
Multiple graph regularized nonnegative matrix factorization JJY Wang, H Bensmail, X Gao Pattern Recognition 46 (10), 2840-2847, 2013	131	2013
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques MA Thafar, RS Olayan, H Ashoor, S Albaradei, VB Bajic, X Gao, ... Journal of Cheminformatics 12, 1-17, 2020	116	2020
RNA Secondary Structure Prediction By Learning Unrolled Algorithms X Chen, Y Li, R Umarov, X Gao, L Song arXiv preprint arXiv:2002.05810, 2020	112	2020
Transfer-medium-free nanofiber-reinforced graphene film and applications in wearable transparent pressure sensors H Ren, L Zheng, G Wang, X Gao, Z Tan, J Shan, L Cui, K Li, M Jian, L Zhu, ... Acs Nano 13 (5), 5541-5548, 2019	112	2019
DeepSimulator: a deep simulator for Nanopore sequencing Y Li, R Han, C Bi, M Li, S Wang, X Gao Bioinformatics 34 (17), 2899-2908, 2018	110	2018
mlDEEPre: Multi-functional enzyme function prediction with hierarchical multi-label deep learning Z Zou, S Tian, X Gao, Y Li Frontiers in Genetics 9, 714, 2018	110	2018

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