| Quantitative proteomics of the cancer cell line encyclopedia DP Nusinow, J Szpyt, M Ghandi, CM Rose, ER McDonald, M Kalocsay, ... Cell 180 (2), 387-402. e16, 2020 | 755 | 2020 |
| Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells J Choi, AJ Huebner, K Clement, RM Walsh, A Savol, K Lin, H Gu, ... Nature 548 (7666), 219-223, 2017 | 258 | 2017 |
| Transposable element expression in tumors is associated with immune infiltration and increased antigenicity Y Kong, CM Rose, AA Cass, AG Williams, M Darwish, S Lianoglou, ... Nature communications 10 (1), 5228, 2019 | 213 | 2019 |
| Defining the carrier proteome limit for single-cell proteomics TK Cheung, CY Lee, FP Bayer, A McCoy, B Kuster, CM Rose Nature Methods 18 (1), 76-83, 2021 | 184 | 2021 |
| Highly Multiplexed Quantitative Mass Spectrometry Analysis of Ubiquitylomes CM Rose, M Isasa, A Ordureau, MA Prado, SA Beausoleil, ... Cell Systems 3 (4), 395-403. e4, 2016 | 178 | 2016 |
| A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-Throughput Protein Signature Characterization BK Erickson, CM Rose, CR Braun, AR Erickson, J Knott, GC McAlister, ... Molecular cell 65 (2), 361-370, 2017 | 136 | 2017 |
| Single-cell proteomics enabled by next-generation sequencing or mass spectrometry HM Bennett, W Stephenson, CM Rose, S Darmanis Nature Methods 20 (3), 363-374, 2023 | 125 | 2023 |
| Complement C1q-dependent excitatory and inhibitory synapse elimination by astrocytes and microglia in Alzheimer’s disease mouse models B Dejanovic, T Wu, MC Tsai, D Graykowski, VD Gandham, CM Rose, ... Nature Aging 2 (9), 837-850, 2022 | 124 | 2022 |
| Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis CM Rose, M Venkateshwaran, JD Volkening, PA Grimsrud, J Maeda, ... Molecular & Cellular Proteomics, 2012 | 124 | 2012 |
| PTP1B controls non-mitochondrial oxygen consumption by regulating RNF213 to promote tumour survival during hypoxia RS Banh, C Iorio, R Marcotte, Y Xu, D Cojocari, AA Rahman, J Pawling, ... Nature cell biology, 2016 | 123 | 2016 |
| NeuCode labels for relative protein quantification AE Merrill, AS Hebert, ME MacGilvray, CM Rose, DJ Bailey, JC Bradley, ... Molecular & Cellular Proteomics 13 (9), 2503-2512, 2014 | 123 | 2014 |
| Shigella ubiquitin ligase IpaH7. 8 targets gasdermin D for degradation to prevent pyroptosis and enable infection G Luchetti, JL Roncaioli, RA Chavez, AF Schubert, EM Kofoed, R Reja, ... Cell Host & Microbe 29 (10), 1521-1530. e10, 2021 | 122 | 2021 |
| Dynamic Regulation of Mitochondrial Import by the Ubiquitin System L Phu, CM Rose, JS Tea, CE Wall, E Verschueren, TK Cheung, ... Molecular Cell 77 (5), 1107-1123. e10, 2020 | 113 | 2020 |
| Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPβ in Microglia A Ndoja, R Reja, SH Lee, JD Webster, H Ngu, CM Rose, DS Kirkpatrick, ... Cell 182 (5), 1156-1169. e12, 2020 | 108 | 2020 |
| Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments L Gatto, R Aebersold, J Cox, V Demichev, J Derks, E Emmott, AM Franks, ... Nature methods 20 (3), 375-386, 2023 | 95 | 2023 |
| DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells J Choi, K Clement, AJ Huebner, J Webster, CM Rose, J Brumbaugh, ... Cell Stem Cell 20 (5), 706-719. e7, 2017 | 82 | 2017 |
| NeuCode Proteomics Reveals Bap1 Regulation of Metabolism JM Baughman, CM Rose, G Kolumam, JD Webster, EM Wilkerson, ... Cell Reports 16 (2), 583-595, 2016 | 73 | 2016 |
| PIKES Analysis Reveals Response to Degraders and Key Regulatory Mechanisms of the CRL4 Network KM Reichermeier, R Straube, JM Reitsma, MJ Sweredoski, CM Rose, ... Molecular Cell 77 (5), 1092-1106. e9, 2020 | 70 | 2020 |
| The negative mode proteome with activated ion negative electron transfer dissociation (AI-NETD) NM Riley, RM JP, CM Rose, AL Richards, NW Kwiecien, DJ Bailey, ... Molecular & Cellular Proteomics 14 (10), 2644-2660, 2015 | 67 | 2015 |
| Instant spectral assignment for advanced decision tree-driven mass spectrometry DJ Bailey, CM Rose, GC McAlister, J Brumbaugh, P Yu, CD Wenger, ... Proceedings of the National Academy of Sciences 109 (22), 8411-8416, 2012 | 63 | 2012 |
