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Manjunatha Kogenaru
Manjunatha Kogenaru
NYU Grossman School of Medicine
Verified email at nyulangone.org - Homepage
Title
Cited by
Cited by
Year
TPRpred: a tool for prediction of TPR-, PPR-and SEL1-like repeats from protein sequences
MR Karpenahalli, AN Lupas, J Söding
BMC bioinformatics 8, 1-8, 2007
2382007
Multiple peaks and reciprocal sign epistasis in an empirically determined genotype-phenotype landscape
A Dawid, DJ Kiviet, M Kogenaru, M De Vos, SJ Tans
Chaos: An Interdisciplinary Journal of Nonlinear Science 20 (2), 2010
462010
Origin of a folded repeat protein from an intrinsically disordered ancestor
H Zhu, E Sepulveda, MD Hartmann, M Kogenaru, A Ursinus, E Sulz, ...
Elife 5, e16761, 2016
442016
An improved Escherichia colistrain to host gene regulatory networks involving both the AraC and LacI inducible transcription factors
M Kogenaru, SJ Tans
Journal of biological engineering 8, 1-5, 2014
372014
Revealing evolutionary pathways by fitness landscape reconstruction
M Kogenaru, MGJ de Vos, SJ Tans
Critical reviews in biochemistry and molecular biology 44 (4), 169-174, 2009
372009
Sign epistasis caused by hierarchy within signalling cascades
P Nghe, M Kogenaru, SJ Tans
Nature communications 9 (1), 1451, 2018
282018
A universal deep-learning model for zinc finger design enables transcription factor reprogramming
DM Ichikawa, O Abdin, N Alerasool, M Kogenaru, AL Mueller, H Wen, ...
Nature Biotechnology 41 (8), 1117-1129, 2023
232023
Drug-Inducible Control of Lethality Genes: A Low Background Destabilizing Domain Architecture Applied to the Gal4-UAS System in Drosophila
M Kogenaru, M Isalan
ACS synthetic biology 7 (6), 1496-1506, 2018
142018
Predicting evolution using regulatory architecture
P Nghe, MGJ de Vos, E Kingma, M Kogenaru, FJ Poelwijk, L Laan, ...
Annual Review of Biophysics 49, 181-197, 2020
82020
Predicting Evolutionary Constraints by Identifying Conflicting Demands in Regulatory Networks
M Kogenaru, P Nghe, FJ Poelwijk, SJ Tans
Cell systems 10 (6), 526-534. e3, 2020
42020
A drug stabilizable GAL80ds for conditional control of gene expression via GAL4-UAS and CRISPR-Cas9 systems in Drosophila
V Kogenaru, M Isalan, M Kogenaru
Scientific Reports 14 (1), 5893, 2024
12024
Engineered transcription-associated Cas9 targeting in eukaryotic cells
GW Goldberg, M Kogenaru, S Keegan, MAB Haase, L Kagermazova, ...
bioRxiv, 2023
2023
Evolutionary constraints in regulatory networks defined by partial order between phenotypes
M Kogenaru, P Nghe, FJ Poelwijk, SJ Tans
bioRxiv, 722520, 2019
2019
Origin of a folded protein from an intrinsically disordered ancestral peptide
H Zhu, E Sepulveda, MD Hartmann, M Kogenaru, J Martin, AN Lupas
PeerJ PrePrints, 2017
2017
Mechanistic understanding of the regulatory network adaptation
M Kogenaru, P Nghe, FJ Poelwijk, SJ Tans
Dutch meeting on Molecular and Cellular Biophysics, 2010
2010
Evolution of phenotypic plasticity in a synthetic regulatory network.
M Kogenaru, P Nghe, FJ Poelwijk, SJ Tans
The fourth annual q-bio conference on cellular information processing, 2010
2010
Evolutionary adaptation in variable environments
M Kogenaru, FJ Poelwijk, R de Leeuw, P Nghe, SJ Tans
Quantitative Evolutionary and Comparative Genomics, 2010
2010
A synthetic regulatory cascade for quantitative studies
M Kogenaru, SJ Tans
The third annual q-bio conference on cellular information processing, 2009
2009
A synthetic regulatory cascade
M Kogenaru, SJ Tans
Dutch meeting on Molecular and Cellular Biophysics, 2008
2008
Exploring protein domain evolution by designing new TPR-like domains
MR Karpenahalli
Tübingen, Univ., Diss., 2006, 2006
2006
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