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Raffaella Rizzi
Raffaella Rizzi
Ricercatore confermato in Informatica, Università degli Studi di Milano-Bicocca
Verified email at disco.unimib.it
Title
Cited by
Cited by
Year
Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis
R Palorini, G Votta, Y Pirola, H De Vitto, S De Palma, C Airoldi, M Vasso, ...
PLoS genetics 12 (3), e1005931, 2016
832016
ASPicDB: a database resource for alternative splicing analysis
T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ...
Bioinformatics 24 (10), 1300-1304, 2008
602008
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences
P Bonizzoni, R Rizzi, G Pesole
BMC bioinformatics 6, 1-16, 2005
512005
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ...
Nucleic acids research 39 (suppl_1), D80-D85, 2010
482010
Exemplar longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007
442007
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19, 1-21, 2018
432018
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ...
Nucleic Acids Research 34 (suppl_2), W440-W443, 2006
412006
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology 7, 278-292, 2019
402019
Computational graph pangenomics: a tutorial on data structures and their applications
JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ...
Natural Computing 21 (1), 81-108, 2022
312022
Computational methods for alternative splicing prediction.
P Bonizzoni, R Rizzi, G Pesole
Briefings in functional genomics & proteomics 5 (1), 2006
312006
Modeling alternative splicing variants from RNA-Seq data with isoform graphs
S Beretta, P Bonizzoni, GD Vedova, Y Pirola, R Rizzi
Journal of Computational Biology 21 (1), 16-40, 2014
222014
Detecting alternative gene structures from spliced ESTs: a computational approach
P Bonizzoni, G Mauri, G Pesole, E Picardi, Y Pirola, R Rizzi
Journal of computational biology 16 (1), 43-66, 2009
222009
FSG: fast string graph construction for de novo assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of computational biology 24 (10), 953-968, 2017
202017
LSG: an external-memory tool to compute string graphs for next-generation sequencing data assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
182016
Multithread multistring Burrows–Wheeler transform and longest common prefix array
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Journal of computational biology 26 (9), 948-961, 2019
162019
An external-memory algorithm for string graph construction
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithmica 78 (2), 394-424, 2017
142017
A colored graph approach to perfect phylogeny with persistent characters
P Bonizzoni, AP Carrieri, G Della Vedova, R Rizzi, G Trucco
Theoretical Computer Science 658, 60-73, 2017
132017
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi
Algorithms for Computational Biology: 4th International Conference, AlCoB …, 2017
122017
Constructing string graphs in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithms in Bioinformatics: 14th International Workshop, WABI 2014 …, 2014
102014
Computing the multi-string BWT and LCP array in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Theoretical Computer Science 862, 42-58, 2021
92021
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