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Daniel E. Cook
Daniel E. Cook
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Year
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3322023
CeNDR, the Caenorhabditis elegans natural diversity resource
DE Cook, S Zdraljevic, JP Roberts, EC Andersen
Nucleic acids research 45 (D1), D650-D657, 2017
3112017
The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
DE Cook, S Zdraljevic, RE Tanny, B Seo, DD Riccardi, LM Noble, ...
Genetics 204 (1), 371-383, 2016
1312016
VCF-kit: assorted utilities for the variant call format
DE Cook, EC Andersen
Bioinformatics 33 (10), 1581-1582, 2017
1252017
Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans
D Lee, S Zdraljevic, L Stevens, Y Wang, RE Tanny, TA Crombie, DE Cook, ...
Nature ecology & evolution 5 (6), 794-807, 2021
97*2021
Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
TA Crombie, S Zdraljevic, DE Cook, RE Tanny, SC Brady, Y Wang, ...
eLife 8, 2019
922019
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA
C Abbosh, AM Frankell, T Harrison, J Kisistok, A Garnett, L Johnson, ...
Nature 616 (7957), 553-562, 2023
892023
The evolution of lung cancer and impact of subclonal selection in TRACERx
AM Frankell, M Dietzen, M Al Bakir, EL Lim, T Karasaki, S Ward, ...
Nature 616 (7957), 525-533, 2023
892023
DYRK1A controls the transition from proliferation to quiescence during lymphoid development by destabilizing Cyclin D3
BJ Thompson, R Bhansali, L Diebold, DE Cook, L Stolzenburg, ...
Journal of Experimental Medicine 212 (6), 953-970, 2015
872015
Antibodies against endogenous retroviruses promote lung cancer immunotherapy
KW Ng, J Boumelha, KSS Enfield, J Almagro, H Cha, O Pich, T Karasaki, ...
Nature 616 (7957), 563-573, 2023
862023
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ...
Nature Biotechnology 41 (2), 232-238, 2023
73*2023
Clinical and environmental influences on metabolic biomarkers collected for newborn screening
KK Ryckman, SL Berberich, OA Shchelochkov, DE Cook, JC Murray
Clinical biochemistry 46 (1-2), 133-138, 2013
712013
Discovery of genomic intervals that underlie nematode responses to benzimidazoles
M Zamanian, DE Cook, S Zdraljevic, SC Brady, D Lee, J Lee, ...
PLoS neglected tropical diseases 12 (3), e0006368, 2018
692018
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species
KM Laricchia, S Zdraljevic, DE Cook, EC Andersen
Molecular biology and evolution 34 (9), 2187-2202, 2017
692017
Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
S Zdraljevic, C Strand, HS Seidel, DE Cook, JG Doench, EC Andersen
PLoS genetics 13 (7), e1006891, 2017
652017
The evolution of non-small cell lung cancer metastases in TRACERx
M Al Bakir, A Huebner, C Martínez-Ruiz, K Grigoriadis, TBK Watkins, ...
Nature 616 (7957), 534-542, 2023
602023
Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
C Kim, J Kim, S Kim, DE Cook, KS Evans, EC Andersen, J Lee
Genome research 29 (6), 1023-1035, 2019
572019
Genomic–transcriptomic evolution in lung cancer and metastasis
C Martínez-Ruiz, JRM Black, C Puttick, MS Hill, J Demeulemeester, ...
Nature 616 (7957), 543-552, 2023
502023
Selection and gene flow shape niche-associated variation in pheromone response
D Lee, S Zdraljevic, DE Cook, L Frézal, JC Hsu, MG Sterken, JAG Riksen, ...
Nature Ecology & Evolution 3 (10), 1455-1463, 2019
412019
A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans
SC Brady, S Zdraljevic, KW Bisaga, RE Tanny, DE Cook, D Lee, Y Wang, ...
Genetics 212 (4), 1453-1468, 2019
392019
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