| Circular DNA elements of chromosomal origin are common in healthy human somatic tissue HD Møller, M Mohiyuddin, I Prada-Luengo, MR Sailani, JF Halling, ... Nature communications 9 (1), 1069, 2018 | 262 | 2018 |
| Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis SME Sahraeian, M Mohiyuddin, R Sebra, H Tilgner, PT Afshar, KF Au, ... Nature communications 8 (1), 59, 2017 | 262 | 2017 |
| Minimizing communication in sparse matrix solvers M Mohiyuddin, M Hoemmen, J Demmel, K Yelick Proceedings of the Conference on High Performance Computing Networking …, 2009 | 190 | 2009 |
| Avoiding communication in sparse matrix computations J Demmel, M Hoemmen, M Mohiyuddin, K Yelick 2008 IEEE International Symposium on Parallel and Distributed Processing, 1-12, 2008 | 185 | 2008 |
| MetaSV: an accurate and integrative structural-variant caller for next generation sequencing M Mohiyuddin, JC Mu, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (16), 2741-2744, 2015 | 154 | 2015 |
| Structural variants in 3000 rice genomes RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ... Genome research 29 (5), 870-880, 2019 | 125 | 2019 |
| An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16, 1-13, 2015 | 117 | 2015 |
| PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022 | 115 | 2022 |
| Deep convolutional neural networks for accurate somatic mutation detection SME Sahraeian, R Liu, B Lau, K Podesta, M Mohiyuddin, HYK Lam Nature communications 10 (1), 1041, 2019 | 109 | 2019 |
| Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms A Abyzov, S Li, DR Kim, M Mohiyuddin, AM Stütz, NF Parrish, XJ Mu, ... Nature communications 6 (1), 7256, 2015 | 92 | 2015 |
| Analysis of photonic networks for a chip multiprocessor using scientific applications G Hendry, S Kamil, A Biberman, J Chan, BG Lee, M Mohiyuddin, A Jain, ... 2009 3rd ACM/IEEE International Symposium on Networks-on-Chip, 104-113, 2009 | 89 | 2009 |
| svclassify: a method to establish benchmark structural variant calls H Parikh, M Mohiyuddin, HYK Lam, H Iyer, D Chen, M Pratt, G Bartha, ... BMC genomics 17, 1-16, 2016 | 87 | 2016 |
| Energy-efficient computing for extreme-scale science D Donofrio, L Oliker, J Shalf, MF Wehner, C Rowen, J Krueger, S Kamil, ... Computer 42 (11), 62-71, 2009 | 81 | 2009 |
| VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications JC Mu, M Mohiyuddin, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (9), 1469-1471, 2015 | 73 | 2015 |
| Fast and accurate read alignment for resequencing JC Mu, H Jiang, A Kiani, M Mohiyuddin, N Bani Asadi, WH Wong Bioinformatics 28 (18), 2366-2373, 2012 | 73 | 2012 |
| Hardware/software co-design for energy-efficient seismic modeling J Krueger, D Donofrio, J Shalf, M Mohiyuddin, S Williams, L Oliker, ... Proceedings of 2011 International Conference for High Performance Computing …, 2011 | 65 | 2011 |
| Systems and methods for processing nucleic acid sequence data NB Asadi, J Chong, H Chen, M Mohiyuddin, A Doupnik US Patent 9,600,625, 2017 | 58 | 2017 |
| Avoiding communication in computing Krylov subspaces J Demmel, M Hoemmen, M Mohiyuddin, K Yelick EECS Dept., UC Berkeley, Tech. Rep. UCB/EECS-2007-123, 2007 | 51 | 2007 |
| Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ... Nature biotechnology 39 (9), 1151-1160, 2021 | 43 | 2021 |
| A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency W Jones, B Gong, N Novoradovskaya, D Li, R Kusko, TA Richmond, ... Genome biology 22, 1-38, 2021 | 30 | 2021 |
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
