| MEGARes: an antimicrobial resistance database for high throughput sequencing SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ... Nucleic acids research 45 (D1), D574-D580, 2017 | 190 | 2017 |
| Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ... Applied and Environmental Microbiology 82 (8), 2433-2443, 2016 | 85 | 2016 |
| Resistome diversity in cattle and the environment decreases during beef production NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ... Elife 5, e13195, 2016 | 75 | 2016 |
| Succinct colored de Bruijn graphs MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ... Bioinformatics 33 (20), 3181-3187, 2017 | 70 | 2017 |
| Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ... Scientific Reports 6 (1), 1-12, 2016 | 67 | 2016 |
| Impact of sequencing depth on the characterization of the microbiome and resistome R Zaheer, N Noyes, RO Polo, SR Cook, E Marinier, G Van Domselaar, ... Scientific reports 8 (1), 1-11, 2018 | 61 | 2018 |
| Mannheimia haemolytica in Feedlot Cattle: Prevalence of Recovery and Associations with Antimicrobial Use, Resistance, and Health Outcomes NR Noyes, KM Benedict, SP Gow, CW Booker, SJ Hannon, TA McAllister, ... Journal of veterinary internal medicine 29 (2), 705-713, 2015 | 52 | 2015 |
| Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis N Noyes, KC Cho, J Ravel, LJ Forney, Z Abdo PloS one 13 (1), e0191625, 2018 | 48 | 2018 |
| Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use KM Benedict, SP Gow, TA McAllister, CW Booker, SJ Hannon, ... PloS one 10 (12), e0143995, 2015 | 35 | 2015 |
| MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ... Nucleic acids research 48 (D1), D561-D569, 2020 | 30 | 2020 |
| Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ... Microbiome 5 (1), 1-13, 2017 | 28 | 2017 |
| A comparative study of serum biochemistry, metabolome and microbiome parameters of clinically healthy, normal weight, overweight, and obese companion dogs GM Forster, J Stockman, N Noyes, AL Heuberger, CD Broeckling, ... Topics in companion animal medicine 33 (4), 126-135, 2018 | 24 | 2018 |
| Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ... Frontiers in microbiology 10, 1980, 2019 | 20 | 2019 |
| Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ... Frontiers in microbiology 9, 1715, 2018 | 20 | 2018 |
| Effects of ceftiofur and chlortetracycline on the resistomes of feedlot cattle MD Weinroth, HM Scott, B Norby, GH Loneragan, NR Noyes, P Rovira, ... Applied and environmental microbiology 84 (13), 2018 | 15 | 2018 |
| Rapid Salmonella detection in experimentally inoculated equine faecal and veterinary hospital environmental samples using commercially available lateral flow … BA Burgess, NR Noyes, DS Bolte, DR Hyatt, DC Van Metre, PS Morley Equine veterinary journal 47 (1), 119-122, 2015 | 14 | 2015 |
| Modelling considerations in the analysis of associations between antimicrobial use and resistance in beef feedlot cattle NR Noyes, KM Benedict, SP Gow, CL Waldner, RJ Reid-Smith, ... Epidemiology & Infection 144 (6), 1313-1329, 2016 | 13 | 2016 |
| Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease JR Owen, N Noyes, AE Young, DJ Prince, PC Blanchard, TW Lehenbauer, ... G3: Genes, Genomes, Genetics 7 (9), 3059-3071, 2017 | 12 | 2017 |
| Circulation of plasmids harboring resistance genes to quinolones and/or extended-spectrum cephalosporins in multiple Salmonella enterica serotypes from swine in the United States E Elnekave, SL Hong, S Lim, SS Hayer, D Boxrud, AJ Taylor, V Lappi, ... Antimicrobial agents and chemotherapy 63 (4), 2019 | 10 | 2019 |
| Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ... Communications biology 2 (1), 1-11, 2019 | 8 | 2019 |
