Noelle Noyes
Noelle Noyes
Assistant Professor, University of Minnesota
Verified email at umn.edu
Title
Cited by
Cited by
Year
MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
1902017
Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain
X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ...
Applied and Environmental Microbiology 82 (8), 2433-2443, 2016
852016
Resistome diversity in cattle and the environment decreases during beef production
NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ...
Elife 5, e13195, 2016
752016
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
702017
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ...
Scientific Reports 6 (1), 1-12, 2016
672016
Impact of sequencing depth on the characterization of the microbiome and resistome
R Zaheer, N Noyes, RO Polo, SR Cook, E Marinier, G Van Domselaar, ...
Scientific reports 8 (1), 1-11, 2018
612018
Mannheimia haemolytica in Feedlot Cattle: Prevalence of Recovery and Associations with Antimicrobial Use, Resistance, and Health Outcomes
NR Noyes, KM Benedict, SP Gow, CW Booker, SJ Hannon, TA McAllister, ...
Journal of veterinary internal medicine 29 (2), 705-713, 2015
522015
Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
N Noyes, KC Cho, J Ravel, LJ Forney, Z Abdo
PloS one 13 (1), e0191625, 2018
482018
Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use
KM Benedict, SP Gow, TA McAllister, CW Booker, SJ Hannon, ...
PloS one 10 (12), e0143995, 2015
352015
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
302020
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5 (1), 1-13, 2017
282017
A comparative study of serum biochemistry, metabolome and microbiome parameters of clinically healthy, normal weight, overweight, and obese companion dogs
GM Forster, J Stockman, N Noyes, AL Heuberger, CD Broeckling, ...
Topics in companion animal medicine 33 (4), 126-135, 2018
242018
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
202019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
202018
Effects of ceftiofur and chlortetracycline on the resistomes of feedlot cattle
MD Weinroth, HM Scott, B Norby, GH Loneragan, NR Noyes, P Rovira, ...
Applied and environmental microbiology 84 (13), 2018
152018
Rapid Salmonella detection in experimentally inoculated equine faecal and veterinary hospital environmental samples using commercially available lateral flow …
BA Burgess, NR Noyes, DS Bolte, DR Hyatt, DC Van Metre, PS Morley
Equine veterinary journal 47 (1), 119-122, 2015
142015
Modelling considerations in the analysis of associations between antimicrobial use and resistance in beef feedlot cattle
NR Noyes, KM Benedict, SP Gow, CL Waldner, RJ Reid-Smith, ...
Epidemiology & Infection 144 (6), 1313-1329, 2016
132016
Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease
JR Owen, N Noyes, AE Young, DJ Prince, PC Blanchard, TW Lehenbauer, ...
G3: Genes, Genomes, Genetics 7 (9), 3059-3071, 2017
122017
Circulation of plasmids harboring resistance genes to quinolones and/or extended-spectrum cephalosporins in multiple Salmonella enterica serotypes from swine in the United States
E Elnekave, SL Hong, S Lim, SS Hayer, D Boxrud, AJ Taylor, V Lappi, ...
Antimicrobial agents and chemotherapy 63 (4), 2019
102019
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 1-11, 2019
82019
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