| An updated evolutionary classification of CRISPR–Cas systems KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ... Nature Reviews Microbiology 13 (11), 722-736, 2015 | 1615 | 2015 |
| Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ... Nature Reviews Microbiology 18 (2), 67-83, 2020 | 236 | 2020 |
| CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems SJ Lange, OS Alkhnbashi, D Rose, S Will, R Backofen Nucleic acids research 41 (17), 8034-8044, 2013 | 116 | 2013 |
| Characterizing leader sequences of CRISPR loci OS Alkhnbashi, SA Shah, RA Garrett, SJ Saunders, F Costa, R Backofen Bioinformatics 32 (17), i576-i585, 2016 | 54 | 2016 |
| CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci OS Alkhnbashi, F Costa, SA Shah, RA Garrett, SJ Saunders, R Backofen Bioinformatics 30 (17), i489-i496, 2014 | 48 | 2014 |
| Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families SA Shah, OS Alkhnbashi, J Behler, W Han, Q She, WR Hess, RA Garrett, ... RNA biology 16 (4), 530-542, 2019 | 41 | 2019 |
| Freiburg RNA tools: a central online resource for RNA-focused research and teaching M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ... Nucleic acids research 46 (W1), W25-W29, 2018 | 39 | 2018 |
| The role of Cas8 in type I CRISPR interference SDB Cass, KA Haas, B Stoll, OS Alkhnbashi, K Sharma, H Urlaub, ... Bioscience reports 35 (3), 2015 | 35 | 2015 |
| Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs V Reimann, OS Alkhnbashi, SJ Saunders, I Scholz, S Hein, R Backofen, ... Nucleic acids research 45 (2), 915-925, 2017 | 20 | 2017 |
| Methanosarcina spherical virus, a novel archaeal lytic virus targeting methanosarcina strains K Weidenbach, L Nickel, H Neve, OS Alkhnbashi, S Künzel, A Kupczok, ... Journal of virology 91 (22), 2017 | 16 | 2017 |
| CRISPR-Cas systems in multicellular cyanobacteria S Hou, M Brenes-Álvarez, V Reimann, OS Alkhnbashi, R Backofen, ... RNA biology 16 (4), 518-529, 2019 | 15 | 2019 |
| The nuts and bolts of the Haloferax CRISPR-Cas system I-B LK Maier, AE Stachler, J Brendel, B Stoll, S Fischer, KA Haas, TS Schwarz, ... RNA biology 16 (4), 469-480, 2019 | 14 | 2019 |
| CRISPR-Cas bioinformatics OS Alkhnbashi, T Meier, A Mitrofanov, R Backofen, B Voß Methods 172, 3-11, 2020 | 13 | 2020 |
| Plasticity of archaeal C/D box sRNA biogenesis V Tripp, R Martin, A Orell, OS Alkhnbashi, R Backofen, L Randau Molecular microbiology 103 (1), 151-164, 2017 | 10 | 2017 |
| Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1 L Nickel, A Ulbricht, OS Alkhnbashi, KU Förstner, L Cassidy, ... RNA biology 16 (4), 492-503, 2019 | 8 | 2019 |
| CRISPR and Salty: CRISPR-Cas systems in Haloarchaea LK Maier, OS Alkhnbashi, R Backofen, A Marchfelder RNA Metabolism and Gene Expression in Archaea, 243-269, 2017 | 4 | 2017 |
| Adaptation induced by self-targeting in a type IB CRISPR-Cas system AE Stachler, J Wörtz, OS Alkhnbashi, I Turgeman-Grott, R Smith, T Allers, ... Journal of Biological Chemistry 295 (39), 13502-13515, 2020 | 3 | 2020 |
| CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems VA Padilha, OS Alkhnbashi, SA Shah, AC De Carvalho, R Backofen GigaScience 9 (6), giaa062, 2020 | 3 | 2020 |
| CRISPRidentify: identification of CRISPR arrays using machine learning approach RB Alexander Mitrofanov, Omer S Alkhnbashi, Sergey A Shmakov, Kira S ... Nucleic Acids Research, 15, 2020 | 2* | 2020 |
| CRISPRidentify: identification of CRISPR arrays using machine learning approach A Mitrofanov, OS Alkhnbashi, SA Shmakov, KS Makarova, EV Koonin, ... bioRxiv, 2020 | 2 | 2020 |
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
