Doyle Ward
TitleCited byYear
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
47632012
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
18632011
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ...
Genome biology 13 (9), R79, 2012
13512012
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
12712012
A catalog of reference genomes from the human microbiome.
KE Nelson, GM Weinstock, SK Highlander, KC Worley, HH Creasy, ...
Science (New York, NY) 328 (5981), 994-999, 2010
5332010
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415, 2011
3862011
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
JD Gawronski, SMS Wong, G Giannoukos, DV Ward, BJ Akerley
Proceedings of the National Academy of Sciences 106 (38), 16422-16427, 2009
2682009
Evaluation of 16S rDNA-based community profiling for human microbiome research
Jumpstart Consortium Human Microbiome Project Data Generation Working Group
PloS one 7 (6), e39315, 2012
2122012
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease
E Papa, M Docktor, C Smillie, S Weber, SP Preheim, D Gevers, ...
PloS one 7 (6), e39242, 2012
1972012
Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants
AL Morrow, AJ Lagomarcino, KR Schibler, DH Taft, Z Yu, B Wang, ...
Microbiome 1 (1), 13, 2013
1942013
Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter
C Greenwood, AL Morrow, AJ Lagomarcino, M Altaye, DH Taft, Z Yu, ...
The Journal of pediatrics 165 (1), 23-29, 2014
1762014
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ...
Genome biology 13 (3), r23, 2012
1752012
Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies
DV Ward, O Draper, JR Zupan, PC Zambryski
Proceedings of the National Academy of Sciences 99 (17), 11493-11500, 2002
1692002
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435, 2016
1562016
Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus
AY Peleg, S Miyakis, DV Ward, AM Earl, A Rubio, DR Cameron, S Pillai, ...
PloS one 7 (1), e28316, 2012
1542012
The success of Acinetobacter species; genetic, metabolic and virulence attributes
AY Peleg, A de Breij, MD Adams, GM Cerqueira, S Mocali, M Galardini, ...
PloS one 7 (10), e46984, 2012
1342012
Assembly of the VirB transport complex for DNA transfer from Agrobacterium tumefaciens to plant cells
JR Zupan, D Ward, P Zambryski
Current opinion in microbiology 1 (6), 649-655, 1998
881998
Agrobacterium tumefaciens VirB8 structure reveals potential protein–protein interaction sites
S Bailey, D Ward, R Middleton, JG Grossmann, PC Zambryski
Proceedings of the National Academy of Sciences 103 (8), 2582-2587, 2006
862006
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
C Milani, GA Lugli, S Duranti, F Turroni, L Mancabelli, C Ferrario, ...
Scientific reports 5, 15782, 2015
852015
Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease
C Grander, TE Adolph, V Wieser, P Lowe, L Wrzosek, B Gyongyosi, ...
Gut 67 (5), 891-901, 2018
842018
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Articles 1–20