Martin Raden, nee Mann
Martin Raden, nee Mann
Verified email at informatik.uni-freiburg.de - Homepage
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences.
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
3542018
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
2452014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
1932013
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
M Mann, PR Wright, R Backofen
Nucleic Acids Research 45 (W1), W435–W439, 2017
1922017
CPSP-tools–Exact and complete algorithms for high-throughput 3D lattice protein studies
M Mann, S Will, R Backofen
BMC bioinformatics 9 (1), 1-8, 2008
572008
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), 2018
392018
CPSP-web-tools: a server for 3D lattice protein studies
M Mann, C Smith, M Rabbath, M Edwards, S Will, R Backofen
Bioinformatics 25 (5), 676-677, 2009
332009
CARNA—alignment of RNA structure ensembles
DA Sorescu, M Möhl, M Mann, R Backofen, S Will
Nucleic acids research 40 (W1), W49-W53, 2012
302012
Protein folding simulation by two-stage optimization
AD Ullah, L Kapsokalivas, M Mann, K Steinhöfel
International Symposium on Intelligence Computation and Applications, 138-145, 2009
302009
antaRNA: ant colony-based RNA sequence design
R Kleinkauf, M Mann, R Backofen
Bioinformatics 31 (19), 3114-3121, 2015
292015
MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions
K Kundu, M Mann, F Costa, R Backofen
Bioinformatics 30 (18), 2668-2669, 2014
282014
GLASSgo–Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence
SC Lott, RA Schäfer, M Mann, R Backofen, WR Hess, B Voß, J Georg
Frontiers in genetics 9, 124, 2018
242018
Atom mapping with constraint programming
M Mann, F Nahar, N Schnorr, R Backofen, PF Stadler, C Flamm
Algorithms for Molecular Biology 9 (1), 1-12, 2014
232014
The graph grammar library-a generic framework for chemical graph rewrite systems
M Mann, H Ekker, C Flamm
International Conference on Theory and Practice of Model Transformations, 52-53, 2013
212013
antaRNA–Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization
R Kleinkauf, T Houwaart, R Backofen, M Mann
BMC bioinformatics 16 (1), 1-7, 2015
202015
Producing high-accuracy lattice models from protein atomic coordinates including side chains
M Mann, R Saunders, C Smith, R Backofen, CM Deane
Advances in bioinformatics 2012, 2012
202012
Classifying proteinlike sequences in arbitrary lattice protein models using LatPack
M Mann, D Maticzka, R Saunders, R Backofen
HFSP journal 2 (6), 396-404, 2008
202008
Efficient exploration of discrete energy landscapes
M Mann, K Klemm
Physical Review E 83 (1), 011113, 2011
192011
Evolution of metabolic networks: a computational frame-work
C Flamm, A Ullrich, H Ekker, M Mann, D Högerl, M Rohrschneider, ...
Journal of Systems Chemistry 1 (1), 1-14, 2010
182010
Signatures of co‐translational folding
R Saunders, M Mann, CM Deane
Biotechnology journal 6 (6), 742-751, 2011
142011
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