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Alexander Goncearenco
Alexander Goncearenco
NCBI and NHGRI, NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions
AK Shaytan, GA Armeev, A Goncearenco, VB Zhurkin, D Landsman, ...
Journal of molecular biology 428 (1), 221-237, 2016
1382016
MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions
M Li, FL Simonetti, A Goncearenco, AR Panchenko
Nucleic acids research 44 (W1), W494-W501, 2016
1252016
A dominant negative heterozygous G87R mutation in the zinc transporter, ZnT-2 (SLC30A2), results in transient neonatal zinc deficiency
I Lasry, YA Seo, H Ityel, N Shalva, B Pode-Shakked, F Glaser, B Berman, ...
Journal of Biological Chemistry 287 (35), 29348-29361, 2012
1122012
MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions
N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ...
Iscience 23 (3), 2020
1082020
APOBEC mutagenesis and copy-number alterations are drivers of proteogenomic tumor evolution and heterogeneity in metastatic thoracic tumors
N Roper, S Gao, TK Maity, AR Banday, X Zhang, A Venugopalan, ...
Cell reports 26 (10), 2651-2666. e6, 2019
1002019
SPACER: server for predicting allosteric communication and effects of regulation
A Goncearenco, S Mitternacht, T Yong, B Eisenhaber, F Eisenhaber, ...
Nucleic acids research 41 (W1), W266-W272, 2013
902013
Finding driver mutations in cancer: Elucidating the role of background mutational processes
AL Brown, M Li, A Goncearenco, AR Panchenko
PLoS computational biology 15 (4), e1006981, 2019
882019
Simple yet functional phosphate-loop proteins
ML Romero Romero, F Yang, YR Lin, A Toth-Petroczy, IN Berezovsky, ...
Proceedings of the National Academy of Sciences 115 (51), E11943-E11950, 2018
822018
Exploring background mutational processes to decipher cancer genetic heterogeneity
A Goncearenco, SL Rager, M Li, QX Sang, IB Rogozin, AR Panchenko
Nucleic acids research 45 (W1), W514-W522, 2017
752017
Thermophilic adaptation of protein complexes inferred from proteomic homology modeling
BG Ma, A Goncearenco, IN Berezovsky
Structure 18 (7), 819-828, 2010
622010
Protein function from its emergence to diversity in contemporary proteins
A Goncearenco, IN Berezovsky
Physical biology 12 (4), 045002, 2015
532015
From sequence to function through structure: Deep learning for protein design
N Ferruz, M Heinzinger, M Akdel, A Goncearenco, L Naef, C Dallago
Computational and Structural Biotechnology Journal 21, 238-250, 2023
482023
Mutational signatures and mutable motifs in cancer genomes
IB Rogozin, YI Pavlov, A Goncearenco, S De, AG Lada, E Poliakov, ...
Briefings in bioinformatics 19 (6), 1085-1101, 2018
472018
Exploring protein-protein interactions as drug targets for anti-cancer therapy with in silico workflows
A Goncearenco, M Li, FL Simonetti, BA Shoemaker, AR Panchenko
Proteomics for Drug Discovery: Methods and Protocols, 221-236, 2017
402017
Prototypes of elementary functional loops unravel evolutionary connections between protein functions
A Goncearenco, IN Berezovsky
Bioinformatics 26 (18), i497-i503, 2010
362010
DNA polymerase η mutational signatures are found in a variety of different types of cancer
IB Rogozin, A Goncearenco, AG Lada, S De, V Yurchenko, G Nudelman, ...
Cell cycle 17 (3), 348-355, 2018
352018
Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers
IB Rogozin, AG Lada, A Goncearenco, MR Green, S De, G Nudelman, ...
Scientific reports 6 (1), 38133, 2016
352016
Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins
A Goncearenco, BG Ma, IN Berezovsky
Nucleic acids research 42 (5), 2879-2892, 2014
312014
Nucleotide binding database NBDB–a collection of sequence motifs with specific protein-ligand interactions
Z Zheng, A Goncearenco, IN Berezovsky
Nucleic acids research 44 (D1), D301-D307, 2016
282016
MethylToSNP: identifying SNPs in Illumina DNA methylation array data
BA LaBarre, A Goncearenco, HM Petrykowska, W Jaratlerdsiri, ...
Epigenetics & Chromatin 12, 1-14, 2019
252019
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Articles 1–20