Gemma L. Holliday
Gemma L. Holliday
Medicines Discovery Catapult
Verified email at md.catapult.org.uk
Title
Cited by
Cited by
Year
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
12012017
Metal ions in biological catalysis: from enzyme databases to general principles
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
JBIC Journal of Biological Inorganic Chemistry 13 (8), 1205-1218, 2008
8432008
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
1822014
Small molecule subgraph detector (SMSD) toolkit
SA Rahman, M Bashton, GL Holliday, R Schrader, JM Thornton
Journal of cheminformatics 1 (1), 1-13, 2009
1722009
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
N Furnham, GL Holliday, TAP de Beer, JOB Jacobsen, WR Pearson, ...
Nucleic acids research 42 (D1), D485-D489, 2014
1652014
Understanding the functional roles of amino acid residues in enzyme catalysis
GL Holliday, JBO Mitchell, JM Thornton
Journal of molecular biology 390 (3), 560-577, 2009
1242009
EC-BLAST: a tool to automatically search and compare enzyme reactions
SA Rahman, SM Cuesta, N Furnham, GL Holliday, JM Thornton
Nature methods 11 (2), 171-174, 2014
1002014
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies
N Furnham, I Sillitoe, GL Holliday, AL Cuff, RA Laskowski, CA Orengo, ...
PLoS computational biology 8 (3), e1002403, 2012
852012
MACiE: exploring the diversity of biochemical reactions
GL Holliday, C Andreini, JD Fischer, SA Rahman, DE Almonacid, ...
Nucleic acids research 40 (D1), D783-D789, 2012
802012
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms
GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, ...
Nucleic Acids Research 35 (suppl_1), D515-D520, 2007
782007
Chemical markup, XML, and the world wide web. 6. CMLReact, an XML vocabulary for chemical reactions
GL Holliday, P Murray-Rust, HS Rzepa
Journal of chemical information and modeling 46 (1), 145-157, 2006
712006
Evolution of enzymes and pathways for the biosynthesis of cofactors
GL Holliday, JM Thornton, A Marquet, AG Smith, F Rébeillé, R Mendel, ...
Natural product reports 24 (5), 972-987, 2007
632007
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
AJM Ribeiro, GL Holliday, N Furnham, JD Tyzack, K Ferris, JM Thornton
Nucleic acids research 46 (D1), D618-D623, 2018
602018
Metal-MACiE: a database of metals involved in biological catalysis
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
Bioinformatics 25 (16), 2088-2089, 2009
582009
Atlas of the radical SAM superfamily: Divergent evolution of function using a “plug and play” domain
GL Holliday, E Akiva, EC Meng, SD Brown, S Calhoun, U Pieper, A Sali, ...
Methods in enzymology 606, 1-71, 2018
522018
Reaction Decoder Tool (RDT): extracting features from chemical reactions
SA Rahman, G Torrance, L Baldacci, S Martínez Cuesta, F Fenninger, ...
Bioinformatics 32 (13), 2065-2066, 2016
522016
The chemistry of protein catalysis
GL Holliday, DE Almonacid, JBO Mitchell, JM Thornton
Journal of molecular biology 372 (5), 1261-1277, 2007
522007
MACiE: a database of enzyme reaction mechanisms
GL Holliday, GJ Bartlett, DE Almonacid, NM O'Boyle, P Murray-Rust, ...
Bioinformatics 21 (23), 4315-4316, 2005
522005
The structures and physicochemical properties of organic cofactors in biocatalysis
JD Fischer, GL Holliday, SA Rahman, JM Thornton
Journal of molecular biology 403 (5), 803-824, 2010
502010
[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis
JN Betz, NW Boswell, CJ Fugate, GL Holliday, E Akiva, AG Scott, ...
Biochemistry 54 (9), 1807-1818, 2015
492015
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Articles 1–20