Follow
Dan Knights
Title
Cited by
Cited by
Year
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
293282010
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
85052012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
67632013
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222-227, 2012
65382012
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
61362019
Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
59032011
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y VŠzquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
25472014
UniFrac: an effective distance metric for microbial community comparison
C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight
The ISME journal 5 (2), 169-172, 2011
20412011
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
19852012
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
BD Muegge, J Kuczynski, D Knights, JC Clemente, A GonzŠlez, ...
Science 332 (6032), 970-974, 2011
16802011
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
MI Smith, T Yatsunenko, MJ Manary, I Trehan, R Mkakosya, J Cheng, ...
Science 339 (6119), 548-554, 2013
11012013
Moving pictures of the human microbiome
JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ...
Genome biology 12 (5), 1-8, 2011
10902011
Bayesian community-wide culture-independent microbial source tracking
D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ...
Nature methods 8 (9), 761-763, 2011
10142011
Cohabiting family members share microbiota with one another and with their dogs
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...
elife 2, e00458, 2013
9462013
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
7672018
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
NP McNulty, T Yatsunenko, A Hsiao, JJ Faith, BD Muegge, AL Goodman, ...
Science translational medicine 3 (106), 106ra106-106ra106, 2011
5892011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
5792011
Enterotypes in the landscape of gut microbial community composition
PI Costea, F Hildebrand, M Arumugam, F Bšckhed, MJ Blaser, ...
Nature microbiology 3 (1), 8-16, 2018
5702018
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ...
PLoS computational biology 9 (1), e1002863, 2013
5052013
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ...
Nature biotechnology 34 (9), 942-949, 2016
4842016
The system can't perform the operation now. Try again later.
Articles 1–20