| AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... Scientific reports 11 (1), 12728, 2021 | 431 | 2021 |
| Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato) AR Ottesen, A González Peña, JR White, JB Pettengill, C Li, S Allard, ... BMC microbiology 13, 1-12, 2013 | 260 | 2013 |
| CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data S Davis, JB Pettengill, Y Luo, J Payne, A Shpuntoff, H Rand, E Strain PeerJ Computer Science 1, e20, 2015 | 249 | 2015 |
| Interpreting whole-genome sequence analyses of foodborne bacteria for regulatory applications and outbreak investigations AW Pightling, JB Pettengill, Y Luo, JD Baugher, H Rand, E Strain Frontiers in microbiology 9, 367953, 2018 | 211 | 2018 |
| On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01. 0004 MW Allard, Y Luo, E Strain, J Pettengill, R Timme, C Wang, C Li, CE Keys, ... PloS one 8 (1), e55254, 2013 | 166 | 2013 |
| Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters RE Timme, JB Pettengill, MW Allard, E Strain, R Barrangou, C Wehnes, ... Genome biology and evolution 5 (11), 2109-2123, 2013 | 143 | 2013 |
| Comparative Genomic Analysis and Virulence Differences in Closely Related Salmonella enterica Serotype Heidelberg Isolates from Humans, Retail Meats, and … M Hoffmann, S Zhao, J Pettengill, Y Luo, SR Monday, J Abbott, SL Ayers, ... Genome biology and evolution 6 (5), 1046-1068, 2014 | 138 | 2014 |
| Characterization and evolution of Salmonella CRISPR-Cas systems N Shariat, RE Timme, JB Pettengill, R Barrangou, EG Dudley Microbiology 161 (2), 374-386, 2015 | 116 | 2015 |
| Phylogenetic analyses of Shigella and enteroinvasive Escherichia coli for the identification of molecular epidemiological markers: whole-genome comparative analysis does not … EA Pettengill, JB Pettengill, R Binet Frontiers in microbiology 6, 177774, 2016 | 109* | 2016 |
| Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14 HJ Edenberg, LJ Bierut, P Boyce, M Cao, S Cawley, R Chiles, KF Doheny, ... BMC genetics 6, 1-8, 2005 | 89 | 2005 |
| AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep 11: 12728 M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... | 82 | 2021 |
| An evaluation of candidate plant DNA barcodes and assignment methods in diagnosing 29 species in the genus Agalinis (Orobanchaceae) JB Pettengill, MC Neel American journal of botany 97 (8), 1391-1406, 2010 | 82 | 2010 |
| Phylogenetics and Differentiation of Salmonella Newport Lineages by Whole Genome Sequencing G Cao, J Meng, E Strain, R Stones, J Pettengill, S Zhao, P McDermott, ... PLoS One 8 (2), e55687, 2013 | 77 | 2013 |
| Biofouling likely serves as a major mode of dispersal for the polychaete tubeworm Hydroides elegans as inferred from microsatellite loci JB Pettengill, DE Wendt, MD Schug, MG Hadfield Biofouling 23 (3), 161-169, 2007 | 68 | 2007 |
| TEMPO AND MODE OF MATING SYSTEM EVOLUTION BETWEEN INCIPIENT CLARKIA SPECIES JB Pettengill, DA Moeller Evolution 66 (4), 1210-1225, 2012 | 65 | 2012 |
| Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing KG Jarvis, JR White, CJ Grim, L Ewing, AR Ottesen, JJG Beaubrun, ... BMC microbiology 15, 1-13, 2015 | 64 | 2015 |
| Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities J Moran-Gilad, V Sintchenko, SK Pedersen, WJ Wolfgang, J Pettengill, ... BMC infectious diseases 15, 1-10, 2015 | 60 | 2015 |
| Permanent genetic resources added to molecular ecology resources database 1 January 2009–30 April 2009 Molecular Ecology Resources Primer Development Consortium, ... Molecular ecology resources 9 (5), 1375-1379, 2009 | 60 | 2009 |
| Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere AR Ottesen, A Gonzalez, R Bell, C Arce, S Rideout, M Allard, P Evans, ... PloS one 8 (9), e73079, 2013 | 59 | 2013 |
| Phylogeography of speciation: allopatric divergence and secondary contact between outcrossing and selfing Clarkia JB Pettengill, DA Moeller Molecular Ecology 21 (18), 4578-4592, 2012 | 59 | 2012 |
