| PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria SC Bayliss, HA Thorpe, NM Coyle, SK Sheppard, EJ Feil Gigascience 8 (10), giz119, 2019 | 155 | 2019 |
| Evolutionary Trade-Offs Underlie the Multi-faceted Virulence of Staphylococcus aureus M Laabei, AC Uhlemann, FD Lowy, ED Austin, M Yokoyama, K Ouadi, ... PLoS biology 13 (9), e1002229, 2015 | 135 | 2015 |
| The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus L Senn, O Clerc, G Zanetti, P Basset, G Prod’hom, NC Gordon, ... MBio 7 (1), 10.1128/mbio. 02039-15, 2016 | 86 | 2016 |
| Comparative analyses of selection operating on nontranslated intergenic regions of diverse bacterial species HA Thorpe, SC Bayliss, LD Hurst, EJ Feil Genetics 206 (1), 363-376, 2017 | 75 | 2017 |
| Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria HA Thorpe, SC Bayliss, SK Sheppard, EJ Feil Gigascience 7 (4), giy015, 2018 | 73 | 2018 |
| A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings HA Thorpe, R Booton, T Kallonen, MJ Gibbon, N Couto, V Passet, ... Nature Microbiology 7 (12), 2054-2067, 2022 | 63* | 2022 |
| Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov. C Merla, C Rodrigues, V Passet, M Corbella, HA Thorpe, TVS Kallonen, ... Frontiers in Microbiology 10, 2360, 2019 | 46* | 2019 |
| Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones S Tyler, S Tyson, A Dibernardo, M Drebot, EJ Feil, M Graham, NC Knox, ... Scientific Reports 8 (1), 10552, 2018 | 35 | 2018 |
| Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing M Senghore, SC Bayliss, BA Kwambana-Adams, E Foster-Nyarko, ... Applied and environmental microbiology 82 (19), 5910-5917, 2016 | 35 | 2016 |
| The use of Oxford Nanopore native barcoding for complete genome assembly SC Bayliss, VL Hunt, M Yokoyama, HA Thorpe, EJ Feil Gigascience 6 (3), gix001, 2017 | 24 | 2017 |
| Strong pathogen competition in neonatal gut colonisation T Mäklin, HA Thorpe, AK Pöntinen, RA Gladstone, Y Shao, M Pesonen, ... Nature Communications 13 (1), 7417, 2022 | 18 | 2022 |
| Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages JK Calland, B Pascoe, SC Bayliss, E Mourkas, E Berthenet, HA Thorpe, ... PLoS genetics 17 (9), e1009829, 2021 | 15 | 2021 |
| A high prevalence of bla OXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England MJ Gibbon, N Couto, S David, R Barden, R Standerwick, K Jagadeesan, ... Microbial Genomics 7 (3), 000509, 2021 | 9 | 2021 |
| Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations HA Thorpe, E Tourrette, K Yahara, FF Vale, S Liu, M Oleastro, T Alarcon, ... Nature Communications 13 (1), 6842, 2022 | 7 | 2022 |
| Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae G Batisti Biffignandi, MJ Gibbon, M Corbella, HA Thorpe, C Merla, ... G3 11 (2), jkab019, 2021 | 3 | 2021 |
| Convergence and global epidemiology of Klebsiella pneumoniae plasmids harbouring the iuc3 virulence locus. MJ Gibbon, N Couto, K Cozens, S Habib, L Cowley, D Aanensen, ... bioRxiv, 2024.01. 05.574329, 2024 | 1 | 2024 |
| Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health … JK Calland, K Haukka, SW Kpordze, A Brusah, M Corbella, C Merla, ... The Lancet Microbe 4 (11), e943-e952, 2023 | 1 | 2023 |
| Detecting co-selection through excess linkage disequilibrium in bacterial genomes S Mallawaarachchi, G Tonkin-Hill, AK Pöntinen, JK Calland, ... bioRxiv, 2023.08. 04.551407, 2023 | 1 | 2023 |
| Escherichia coli plasmidome maps the game of clones S Arredondo-Alonso, AK Pontinen, J Gama, RA Gladstone, K Harms, ... bioRxiv, 2023.10. 14.562336, 2023 | 1 | 2023 |
| Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae KK Tsang, MMC Lam, RR Wick, KL Wyres, MA Bachman, S Baker, K Barry, ... bioRxiv, 2024.04. 05.587953, 2024 | | 2024 |
E J FeilProfessor of Microbial EvolutionVerified email at bath.ac.uk
