| VDJtools: unifying post-analysis of T cell receptor repertoires M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ... PLoS computational biology 11 (11), e1004503, 2015 | 552 | 2015 |
| VDJdb: a curated database of T-cell receptor sequences with known antigen specificity M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ... Nucleic acids research 46 (D1), D419-D427, 2018 | 414 | 2018 |
| VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ... Nucleic Acids Research 48 (D1), D1057-D1062, 2020 | 312 | 2020 |
| SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T cell receptors AS Shomuradova, MS Vagida, SA Sheetikov, KV Zornikova, D Kiryukhin, ... Immunity 53 (6), 1245-1257. e5, 2020 | 232 | 2020 |
| VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2 M Goncharov, D Bagaev, D Shcherbinin, I Zvyagin, D Bolotin, PG Thomas, ... Nature methods 19 (9), 1017-1019, 2022 | 60 | 2022 |
| MAGERI: Computational pipeline for molecular-barcoded targeted resequencing M Shugay, AR Zaretsky, DA Shagin, IA Shagina, IA Volchenkov, ... PLoS computational biology 13 (5), e1005480, 2017 | 49 | 2017 |
| Exploring the pre-immune landscape of antigen-specific T cells MV Pogorelyy, AD Fedorova, JE McLaren, K Ladell, DV Bagaev, ... Genome Medicine 10 (1), 1-14, 2018 | 42 | 2018 |
| VDJviz: a versatile browser for immunogenomics data DV Bagaev, IV Zvyagin, EV Putintseva, M Izraelson, OV Britanova, ... BMC genomics 17, 1-11, 2016 | 37 | 2016 |
| Variational message passing and local constraint manipulation in factor graphs İ Şenöz, T van de Laar, D Bagaev, B de Vries Entropy 23 (7), 807, 2021 | 22 | 2021 |
| Reactive message passing for scalable Bayesian inference D Bagaev, B de Vries Scientific Programming 2023, 2021 | 15 | 2021 |
| Improving parallel efficiency of a complex hydrogeological problem simulation in GeRa D Bagaev, F Grigoriev, I Kapyrin, I Konshin, V Kramarenko, A Plenkin Supercomputing: 5th Russian Supercomputing Days, RuSCDays 2019, Moscow …, 2019 | 8 | 2019 |
| Dynamic optimization of linear solver parameters in mathematical modelling of unsteady processes D Bagaev, I Konshin, K Nikitin Supercomputing: Third Russian Supercomputing Days, RuSCDays 2017, Moscow …, 2017 | 8 | 2017 |
| Message passing-based inference in the Gamma mixture model A Podusenko, B van Erp, D Bagaev, İ Şenöz, B de Vries 2021 IEEE 31st International Workshop on Machine Learning for Signal …, 2021 | 6 | 2021 |
| RxInfer: A Julia package for reactive real-time Bayesian inference D Bagaev, A Podusenko, B De Vries Journal of Open Source Software 8 (84), 5161, 2023 | 5 | 2023 |
| ReactiveMP. jl: A Julia package for reactive variational Bayesian inference D Bagaev, B van Erp, A Podusenko, B de Vries Software Impacts 12, 100299, 2022 | 2 | 2022 |
| Reactivemp. jl: A Julia package for reactive message passing-based Bayesian inference D Bagaev, B de Vries JuliaCon Proceedings 1 (1), 2022 | 2 | 2022 |
| Развитие программной платформы INMOST: динамические сетки, линейные решатели и автоматическое дифференцирование ДВ Багаев, АИ Бурачковский, АА Данилов, ИН Коньшин, КД Терехов | 2 | 2016 |
| Message passing-based inference in switching autoregressive models A Podusenko, B van Erp, D Bagaev, B de Vries 2022 30th European Signal Processing Conference (EUSIPCO), 1497-1501, 2022 | 1 | 2022 |
| Reactive Probabilistic Programming for Scalable Bayesian Inference DV Bagaev | | 2023 |
| SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T-cell receptors (preprint) AS Shomuradova, MS Vagida, SA Sheetikov, KV Zornikova, D Kiryukhin, ... | | 2020 |
Mikhail ShugayGenomics of Adaptive Immunity, IBCh/RNRMU/CEITECVerified email at ceitec.muni.cz
