User profiles for author:Paul author:Ginart

Paul Ginart

MD-PhD Trainee, University of Pennsylvania
Verified email at mail.med.upenn.edu
Cited by 266

Generic method of preparing multifunctional fluorescent nanoparticles using flash nanoprecipitation

M Akbulut, P Ginart, ME Gindy… - Advanced Functional …, 2009 - Wiley Online Library
There is increased demand for nanoparticles with a high fluorescence yield that have the
desired excitation wavelength, surface functionalization, and particle size to act as biological
probes. Here, a simple, rapid, and robust method, Flash NanoPrecipitation (FNP), to …

Visualizing SNVs to quantify allele-specific expression in single cells

MJ Levesque, P Ginart, Y Wei, A Raj - Nature methods, 2013 - nature.com
We present a FISH-based method for detecting single-nucleotide variants (SNVs) in exons
and introns on individual RNA transcripts with high efficiency. We used this method to
quantify allelic expression in cell populations and in single cells, and also to distinguish …

Structure, dynamics, and thermodynamics of a family of potentials with tunable softness

…, PG Debenedetti, FH Stillinger, P Ginart - The Journal of chemical …, 2011 - aip.scitation.org
We investigate numerically the structure, thermodynamics, and relaxation behavior of a
family of (n, 6) Lennard-Jones-like glass-forming binary mixtures interacting via pair
potentials with variable softness, fixed well depth, and fixed well depth location. These …

A hyperactive transcriptional state marks genome reactivation at the mitosis–G1 transition

…, CR Bartman, P Huang, P Ginart… - Genes & …, 2016 - genesdev.cshlp.org
During mitosis, RNA polymerase II (Pol II) and many transcription factors dissociate from
chromatin, and transcription ceases globally. Transcription is known to restart in bulk by
telophase, but whether de novo transcription at the mitosis–G1 transition is in any way …

Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant

P Ginart, JM Kalish, CL Jiang, CY Alice… - Genes & …, 2016 - genesdev.cshlp.org
Imprinting is a classic mammalian epigenetic phenomenon that results in expression from a
single parental allele. Imprinting defects can lead to inappropriate expression from the
normally silenced allele, but it remains unclear whether every cell in a mutant organism …

RNA sequencing in situ

P Ginart, A Raj - Nature biotechnology, 2014 - nature.com
Figure 1 Choosing the proper assay for gene expression involves trade-offs on parameters
such as throughput or positional resolution. Northern blots assay a few genes at a time and
average over bulk samples. RNA-seq provides tremendous throughput, but positional …

A Hyperactive Transcriptional State Marks Genome Reactivation during Mitotic Exit

GA Blobel, CCS Hsiung, P Huang, C Keller, P Ginart… - 2015 - Am Soc Hematology
The tremendous proliferative capacity of erythroid precursor cells underlies the production of
over a million red blood cells per second in adult humans. During every mitosis the
mammalian nucleus is disassembled and transcriptionally silent. Genome reactivation after …

Visualizing Allele Specific Expression in Single Cells

P Ginart - 2018 - repository.upenn.edu
Single molecule RNA FISH techniques have enabled the quantification of gene expression
at the single cell level, revealing significant variability that has been previously obscured by
techniques measuring population averages. These techniques, however, have been limited …

[CITATION][C] IEEE GREENTECH 2014

…, D Duan, P Frenger, L Garcia, A Ginart… - ieeexplore.ieee.org
SM Alam, Kansas State University, USA Alicia Allen, National Renewable Energy Laboratory
(NREL), USA Shingo Ata, Osaka City University, Japan Hamed Babazadehrokni, Colorado Energy
Research Technologies (CERT), USA Amos Brocco, Karlsruher Institut für Technologie …