| A comparison of single-cell trajectory inference methods W Saelens, R Cannoodt, H Todorov, Y Saeys Nature biotechnology 37 (5), 547-554, 2019 | 325 | 2019 |
| Computational methods for trajectory inference from single‐cell transcriptomics R Cannoodt, W Saelens, Y Saeys European journal of immunology 46 (11), 2496-2506, 2016 | 106 | 2016 |
| A comprehensive evaluation of module detection methods for gene expression data W Saelens, R Cannoodt, Y Saeys Nature communications 9 (1), 1090, 2018 | 79 | 2018 |
| The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages CL Scott, W T’Jonck, L Martens, H Todorov, D Sichien, B Soen, ... Immunity 49 (2), 312-325. e5, 2018 | 75 | 2018 |
| Genomic amplifications and distal 6q loss: novel markers for poor survival in high-risk neuroblastoma patients P Depuydt, V Boeva, TD Hocking, R Cannoodt, IM Ambros, PF Ambros, ... JNCI: Journal of the National Cancer Institute 110 (10), 1084-1093, 2018 | 41 | 2018 |
| SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development R Cannoodt, W Saelens, D Sichien, S Tavernier, S Janssens, M Guilliams, ... bioRxiv, 079509, 2016 | 39 | 2016 |
| Essential guidelines for computational method benchmarking LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ... Genome Biology 20 (1), 125, 2019 | 36 | 2019 |
| arrEYE: a customized platform for high-resolution copy number analysis of coding and noncoding regions of known and candidate retinal dystrophy genes and retinal noncoding RNAs C Van Cauwenbergh, K Van Schil, R Cannoodt, M Bauwens, ... Genetics in Medicine 19 (4), 457-466, 2017 | 29 | 2017 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, HR De Bezieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1-13, 2020 | 28 | 2020 |
| A scalable SCENIC workflow for single-cell gene regulatory network analysis B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ... Nature Protocols 15 (7), 2247-2276, 2020 | 19 | 2020 |
| Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma. A Decock, M Ongenaert, R Cannoodt, K Verniers, B De Wilde, G Laureys, ... Oncotarget 7 (2), 1960-1972, 2016 | 15 | 2016 |
| Network Inference from Single-Cell Transcriptomic Data H Todorov, R Cannoodt, W Saelens, Y Saeys Gene Regulatory Networks, 235-249, 2019 | 12 | 2019 |
| IncGraph: Incremental graphlet counting for topology optimisation R Cannoodt, J Ruyssinck, J Ramon, K De Preter, Y Saeys PloS one 13 (4), e0195997, 2018 | 3 | 2018 |
| dyngen: a multi-modal simulator for spearheading new single-cell omics analyses R Cannoodt, W Saelens, L Deconinck, Y Saeys BioRxiv, 2020 | 2 | 2020 |
| Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome S Claeys, G Denecker, R Cannoodt, C Kumps, K Durinck, F Speleman, ... Oncotarget 8 (63), 106820, 2017 | 2 | 2017 |
| Network inference by integrating biclustering and feature selection R Cannoodt, J Ruyssinck, K De Preter, T Dhaene, Y Saeys BeNeLux Bioinformatics Conference 2013, 33-33, 2013 | 2 | 2013 |
| TinGa: fast and flexible trajectory inference with Growing Neural Gas H Todorov, R Cannoodt, W Saelens, Y Saeys Bioinformatics 36 (Supplement_1), i66-i74, 2020 | 1 | 2020 |
| The Rockerverse: Packages and Applications for Containerization with R D Nüst, D Eddelbuettel, D Bennett, R Cannoodt, D Clark, G Daroczi, ... arXiv preprint, 2020 | 1 | 2020 |
| The RNA Atlas, a single nucleotide resolution map of the human transcriptome L Lorenzi, HS Chiu, FA Cobos, S Gross, PJ Volders, R Cannoodt, ... bioRxiv, 807529, 2019 | 1 | 2019 |
| The Rockerverse: Packages and Applications for Containerisation with R D Nust, D Eddelbuettel, D Bennett, R Cannoodt, D Clark, G Daroczi, ... R JOURNAL 12 (1), 437-461, 2020 | | 2020 |
Yvan SaeysVIB - Ghent UniversityVerified email at ugent.be
