Follow
Robrecht Cannoodt
Title
Cited by
Cited by
Year
A comparison of single-cell trajectory inference methods
W Saelens, R Cannoodt, H Todorov, Y Saeys
Nature biotechnology 37 (5), 547-554, 2019
6722019
A comprehensive evaluation of module detection methods for gene expression data
W Saelens, R Cannoodt, Y Saeys
Nature communications 9 (1), 1090, 2018
1532018
Computational methods for trajectory inference from single‐cell transcriptomics
R Cannoodt, W Saelens, Y Saeys
European journal of immunology 46 (11), 2496-2506, 2016
1462016
A scalable SCENIC workflow for single-cell gene regulatory network analysis
B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ...
Nature Protocols 15 (7), 2247-2276, 2020
1442020
Trajectory-based differential expression analysis for single-cell sequencing data
K Van den Berge, HR De Bezieux, K Street, W Saelens, R Cannoodt, ...
Nature communications 11 (1), 1-13, 2020
1292020
The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages
CL Scott, W T’Jonck, L Martens, H Todorov, D Sichien, B Soen, ...
Immunity 49 (2), 312-325. e5, 2018
1262018
Essential guidelines for computational method benchmarking
LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ...
Genome Biology 20 (1), 125, 2019
712019
A comparison of single-cell trajectory inference methods: towards more accurate and robust tools
W Saelens, R Cannoodt, H Todorov, Y Saeys
BioRxiv, 276907, 2018
692018
Genomic amplifications and distal 6q loss: novel markers for poor survival in high-risk neuroblastoma patients
P Depuydt, V Boeva, TD Hocking, R Cannoodt, IM Ambros, PF Ambros, ...
JNCI: Journal of the National Cancer Institute 110 (10), 1084-1093, 2018
632018
SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development
R Cannoodt, W Saelens, D Sichien, S Tavernier, S Janssens, M Guilliams, ...
bioRxiv, 079509, 2016
572016
arrEYE: a customized platform for high-resolution copy number analysis of coding and noncoding regions of known and candidate retinal dystrophy genes and retinal noncoding RNAs
C Van Cauwenbergh, K Van Schil, R Cannoodt, M Bauwens, ...
Genetics in Medicine 19 (4), 457-466, 2017
362017
The RNA Atlas expands the catalog of human non-coding RNAs
L Lorenzi, HS Chiu, FA Cobos, S Gross, PJ Volders, R Cannoodt, ...
Nature Biotechnology, 1-13, 2021
292021
Network Inference from Single-Cell Transcriptomic Data
H Todorov, R Cannoodt, W Saelens, Y Saeys
Gene Regulatory Networks, 235-249, 2019
202019
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma.
A Decock, M Ongenaert, R Cannoodt, K Verniers, B De Wilde, G Laureys, ...
Oncotarget 7 (2), 1960-1972, 2016
182016
SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development. bioRxiv 079509
R Cannoodt, W Saelens, D Sichien, S Tavernier, S Janssens, M Guilliams, ...
DOI 10, 079509, 2016
162016
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells
R Cannoodt, W Saelens, L Deconinck, Y Saeys
Nature Communications 12 (1), 1-9, 2021
152021
TinGa: fast and flexible trajectory inference with Growing Neural Gas
H Todorov, R Cannoodt, W Saelens, Y Saeys
Bioinformatics 36 (Supplement_1), i66-i74, 2020
92020
The Rockerverse: Packages and Applications for Containerization with R
D Nüst, D Eddelbuettel, D Bennett, R Cannoodt, D Clark, G Daroczi, ...
arXiv preprint, 2020
62020
The RNA Atlas, a single nucleotide resolution map of the human transcriptome
L Lorenzi, HS Chiu, FA Cobos, S Gross, PJ Volders, R Cannoodt, ...
bioRxiv, 807529, 2019
52019
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ...
Thirty-fifth Conference on Neural Information Processing Systems Datasets …, 2021
42021
The system can't perform the operation now. Try again later.
Articles 1–20