| A comparison of single-cell trajectory inference methods W Saelens, R Cannoodt, H Todorov, Y Saeys Nature biotechnology 37 (5), 547-554, 2019 | 1299 | 2019 |
| A scalable SCENIC workflow for single-cell gene regulatory network analysis B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ... Nature Protocols 15 (7), 2247-2276, 2020 | 602 | 2020 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1-13, 2020 | 441 | 2020 |
| A comprehensive evaluation of module detection methods for gene expression data W Saelens, R Cannoodt, Y Saeys Nature communications 9 (1), 1090, 2018 | 264 | 2018 |
| Computational methods for trajectory inference from single‐cell transcriptomics R Cannoodt, W Saelens, Y Saeys European journal of immunology 46 (11), 2496-2506, 2016 | 205 | 2016 |
| The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages CL Scott, W T’Jonck, L Martens, H Todorov, D Sichien, B Soen, ... Immunity 49 (2), 312-325. e5, 2018 | 197 | 2018 |
| Essential guidelines for computational method benchmarking LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ... Genome Biology 20 (1), 125, 2019 | 134 | 2019 |
| SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development R Cannoodt, W Saelens, D Sichien, S Tavernier, S Janssens, M Guilliams, ... bioRxiv, 079509, 2016 | 105 | 2016 |
| Genomic amplifications and distal 6q loss: novel markers for poor survival in high-risk neuroblastoma patients P Depuydt, V Boeva, TD Hocking, R Cannoodt, IM Ambros, PF Ambros, ... JNCI: Journal of the National Cancer Institute 110 (10), 1084-1093, 2018 | 91 | 2018 |
| The RNA Atlas expands the catalog of human non-coding RNAs L Lorenzi, HS Chiu, F Avila Cobos, S Gross, PJ Volders, R Cannoodt, ... Nature biotechnology 39 (11), 1453-1465, 2021 | 89 | 2021 |
| Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells R Cannoodt, W Saelens, L Deconinck, Y Saeys Nature Communications 12 (1), 1-9, 2021 | 85* | 2021 |
| A sandbox for prediction and integration of dna, rna, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... Thirty-fifth Conference on Neural Information Processing Systems Datasets …, 2021 | 65 | 2021 |
| Multimodal single cell data integration challenge: results and lessons learned C Lance, MD Luecken, DB Burkhardt, R Cannoodt, P Rautenstrauch, ... bioRxiv, 2022 | 48 | 2022 |
| arrEYE: a customized platform for high-resolution copy number analysis of coding and noncoding regions of known and candidate retinal dystrophy genes and retinal noncoding RNAs C Van Cauwenbergh, K Van Schil, R Cannoodt, M Bauwens, ... Genetics in Medicine 19 (4), 457-466, 2017 | 48 | 2017 |
| Recent advances in trajectory inference from single-cell omics data L Deconinck, R Cannoodt, W Saelens, B Deplancke, Y Saeys Current Opinion in Systems Biology 27, 100344, 2021 | 29 | 2021 |
| Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma. A Decock, M Ongenaert, R Cannoodt, K Verniers, B De Wilde, G Laureys, ... Oncotarget 7 (2), 1960-1972, 2016 | 29 | 2016 |
| Network Inference from Single-Cell Transcriptomic Data H Todorov, R Cannoodt, W Saelens, Y Saeys Gene Regulatory Networks, 235-249, 2019 | 25 | 2019 |
| TinGa: fast and flexible trajectory inference with Growing Neural Gas H Todorov, R Cannoodt, W Saelens, Y Saeys Bioinformatics 36 (Supplement_1), i66-i74, 2020 | 21 | 2020 |
| SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development. bioRxiv 079509 R Cannoodt, W Saelens, D Sichien, S Tavernier, S Janssens, M Guilliams, ... DOI 10, 079509, 2016 | 17 | 2016 |
| The Rockerverse: Packages and Applications for Containerization with R D Nüst, D Eddelbuettel, D Bennett, R Cannoodt, D Clark, G Daroczi, ... arXiv preprint, 2020 | 13 | 2020 |
Yvan SaeysVIB - Ghent UniversityVerified email at ugent.be
